Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47070 420 / 2e-133 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 403 / 2e-126 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 147 / 4e-36 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 147 / 5e-36 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G33810 123 / 1e-32 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 124 / 2e-32 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G02065 126 / 2e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G15270 120 / 5e-31 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT5G43270 125 / 2e-30 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G69170 122 / 9e-30 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010071 [exp] 863 / 0 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10038043 [exp] 632 / 0 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10009984 [exp] 613 / 0 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10016275 [exp] 129 / 1e-32 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10028181 [exp] 126 / 2e-31 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10015421 [exp] 120 / 2e-31 AT2G33810 128 / 4e-39 squamosa promoter binding protein-like 3 (.1) Lus10013999 [exp] 120 / 3e-31 AT2G33810 128 / 6e-39 squamosa promoter binding protein-like 3 (.1) Lus10005548 [exp] 121 / 4e-31 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1) Lus10012020 [exp] 127 / 9e-31 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114300 [exp] 588 / 0 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.002G188700 [exp] 588 / 0 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G098600 [exp] 445 / 2e-141 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 424 / 2e-133 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.005G258700 [exp] 160 / 4e-40 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G002400 [exp] 155 / 2e-38 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.001G398200 [exp] 130 / 2e-34 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.003G169400 [exp] 131 / 2e-33 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.011G116800 [exp] 126 / 1e-32 AT3G15270 159 / 5e-49 squamosa promoter binding protein-like 5 (.1) Potri.001G058600 [exp] 129 / 2e-32 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10004523 pacid=23182196 polypeptide=Lus10004523 locus=Lus10004523.g ID=Lus10004523.BGIv1.0 annot-version=v1.0 ATGGAAGCTAGATTTGGTACTGAAGCTGCTCATTTCTATGGTATGAGCGCCATGGGTATGAGGACAGTGGGGAAAAGAAGTCTAGAGTGGGATTTAAACG ACTGGAAATGGGATGGAGATCTTTTCATTGCTAGTCCTTTGAACAGTGTGCCTAATTCTGCTGGTATGAGTAAGCAGTTTTTCCCTCTTGCCACTACTGG AAATTCCTCCAACAGTTCCTCCTCTTGCTCCGATGAAGTAAATCTGGAGATTGAGAAAGGGAGGAGGGAATCTGAGAAAAGGAGAAGGGTTATTGACCTC GAAGAGGGCAACTCCAATAATGAGCAGGAAGCTGGTACTCTTAGCCTGAAGATTGGTGGTCATGGGGGAAACTGGGAAGGACACAGTGGGAAGAAGACCA AGTTGAGTGGTGGGAGTAGTAGCTCCAGTCGTGCAGCTTGTCAGGTGGAGGACTGTGGCGCTGATCTGAGCAAGGCCAAGGATTATCACAGAAGGCATAA AGTCTGTGAGATGCATTCGAAGGCAACCAAGGCCCTTGTTGCAAATGTCATGCAGCGTTTCTGTCAGCAGTGCAGCAGGTTTCATGTCCTTCAAGAATTT GATGAAGGGAAGAGAAGCTGCCGCAGACGTTTGGCTGGCCATAATAAAAGAAGAAGGAAGACAAATCCCGAGTCTGGTACCAACTCGAACAATGTAAATG ATGATCAGACTGGCGGCTACTTGCTGATAAGTCTTTTGAAGACACTGTCAAATATGCACTCTAATAAATCAGACCAAACAACAGAACAAGATTTGTTGTC TCATCTCTTAAGGGGCCTAGCTGGGCACACAATTGAACAAGGCGGACAAAATATATCTGGGATCTTACAAGAACCTCAAGAATTGCTAAACAATGGCTCT CTGTCGGGAATACCCAAACAGCAAGCTCAGCTTGTGCGTGCAAATGGTGCCAGTATGCAGACCTCGTCCTCTACGAAATCTAGGATGACAAATAACTATC CAGCATGTTCTGAAGTTCGAGACAGTAATCCAGGCCACATGAAGATCAATAACTTTGATCTGAATGATGCCTATATTGACTCGGATGATGGAACTGAATA TGCGGAGAGATCACCGGTTCCTACAAATGGGGGGACTAGCTCCCTTGGTTGCCCTTCGTGGGCACAACAAGACTCCCAACAATCGAGTCCACCTCAGACG AGTGGAAACTCAGATTCAACGTCTCCACAATCTCCTGCCAGTTCCAGTGGAGATGCTCAGTGCCGGACAGACCGAATCGTTTTTAAGCTATTTGGGAAAG AACCAAGTGATTTTCCTTTGGTTGTACGAGCCCAGATCCTTGACTGGCTTTCTCATAGTCCAACTGACATTGAGAGCTACATTCGTCCTGGTTGTATTGT TCTAACCATTTACCTTCGTCAGGATGAGGCTGCTTGGGATGAGCTCTGCTGTGATCTTAGCAACAGTTTGAGTAGGCTTCTGCATGTGTCTCATGACTCT TTCTGGAGTACTGGATGGATATTTGTCATGGTGGAACATCAAATTGCATTTGCTTGCGATGTTGCTGAAGAAGATGTTTGTTCAGAGATCCGTATGCTTG AAGATGCCTTGGAATTTATTGAAACTGATGATGACTTGGGGGAAGGTGGAAGAATTGAAGCCAAAAATCAAGCAATGGAATTCATTCACGAAATGGGTTG GCTTTTGCACAGAATACAATCAAATTCAAGACTGAACGACATGGCTCCCACTGCAGATGTGTTCCCTATAACCCGTCTCAAATGGCTTATGGACTTCTCC GTGGACCGCGAATGGCATGCTGTTGTGAGAAAGCTTCTTGAAGTGGTTCTTCATGGCATGGTTGATATAGGAGCACACAGCTCTTTGAATGTAGCTTTGG TGGAAATGGGCATCCTTCACAGAGCTGTGAGGAGGAATTCCAGGTCCTTAGTCGAGTTCCTTCTGAAATATGTCCCCGAGAAGATAGAGCCTGGAAACAA GGCAGTTATCACTTGGACAGAAAGCAACGATGGGTGTCTGTTTAGGCCAGATATGGCAGGCCCTGGAGGTTTGACCCCTCTTCATATTGCAGCTGGCAAA GATGGCTCTGAAGATGTACTCGATGCATTAACCAACGATTCCAAAATGATGGGAGTTGAAGCATGGAAGAACTCTCGTGATAGCACTGGCTTCACGCCAG AGGACTATGCTCGCCTGCGCGGACACTACTCTTACATCCACCTAGTACAGAGGAAGATCAACAGCAGGAAATCATCAGGGTCGGGCCATGTGGTGCTCGA GATACCTGCCGTTCAGGAAACCAGCTCTAACGAGAAGCAGAATGAAGCGTTGAGCTTGGCATTGGAGATTGCGCAAACAATGTCGGAACCGGCTGGTGGT GGTAGCAGCAGCAACTGCAAACTATGCAGCCAGAAAGTGGCGTATGGAGTATCGTCGAGGAGGTCTATGCTGTACAGGCCAGCAATGCTGTCAATGGTGG CGGTTGCGGCAGTGTGCGTGTGTGTGGCTCTTCTGTTCAAGAGCTGTCCCGAGGTGGTGTACGTTTTGAGTCCATTCAGGTGGGAAATGCTCGAGTTTGG AACCAGCTAA
AA sequence Show only first row Show all	>Lus10004523 pacid=23182196 polypeptide=Lus10004523 locus=Lus10004523.g ID=Lus10004523.BGIv1.0 annot-version=v1.0 MEARFGTEAAHFYGMSAMGMRTVGKRSLEWDLNDWKWDGDLFIASPLNSVPNSAGMSKQFFPLATTGNSSNSSSSCSDEVNLEIEKGRRESEKRRRVIDL EEGNSNNEQEAGTLSLKIGGHGGNWEGHSGKKTKLSGGSSSSSRAACQVEDCGADLSKAKDYHRRHKVCEMHSKATKALVANVMQRFCQQCSRFHVLQEF DEGKRSCRRRLAGHNKRRRKTNPESGTNSNNVNDDQTGGYLLISLLKTLSNMHSNKSDQTTEQDLLSHLLRGLAGHTIEQGGQNISGILQEPQELLNNGS LSGIPKQQAQLVRANGASMQTSSSTKSRMTNNYPACSEVRDSNPGHMKINNFDLNDAYIDSDDGTEYAERSPVPTNGGTSSLGCPSWAQQDSQQSSPPQT SGNSDSTSPQSPASSSGDAQCRTDRIVFKLFGKEPSDFPLVVRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEAAWDELCCDLSNSLSRLLHVSHDS FWSTGWIFVMVEHQIAFACDVAEEDVCSEIRMLEDALEFIETDDDLGEGGRIEAKNQAMEFIHEMGWLLHRIQSNSRLNDMAPTADVFPITRLKWLMDFS VDREWHAVVRKLLEVVLHGMVDIGAHSSLNVALVEMGILHRAVRRNSRSLVEFLLKYVPEKIEPGNKAVITWTESNDGCLFRPDMAGPGGLTPLHIAAGK DGSEDVLDALTNDSKMMGVEAWKNSRDSTGFTPEDYARLRGHYSYIHLVQRKINSRKSSGSGHVVLEIPAVQETSSNEKQNEALSLALEIAQTMSEPAGG GSSSNCKLCSQKVAYGVSSRRSMLYRPAMLSMVAVAAVCVCVALLFKSCPEVVYVLSPFRWEMLEFGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	0	1
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	3.5	0.8792
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	3.7	0.8677
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	3.9	0.8724
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	3.9	0.8985
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	4.2	0.8952
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	4.9	0.8856
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	6.2	0.8520
AT2G25800			Protein of unknown function (D...		Lus10013391 [exp]	8.1	0.8680
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	9.8	0.8468
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	10.4	0.8456

Compare expression of checked genes

Lus10004523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.