Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62220 585 / 0 Protein kinase superfamily protein (.1) AT2G47060 581 / 0 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G17410 538 / 0 Protein kinase superfamily protein (.1) AT1G48210 525 / 0 Protein kinase superfamily protein (.1.2) AT3G59350 478 / 5e-170 Protein kinase superfamily protein (.1.2.3) AT1G06700 471 / 3e-167 Protein kinase superfamily protein (.1.2) AT2G43230 472 / 6e-167 Protein kinase superfamily protein (.1.2) AT2G30740 468 / 7e-166 Protein kinase superfamily protein (.1) AT2G41970 464 / 1e-164 Protein kinase superfamily protein (.1) AT1G48220 459 / 1e-162 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010072 [exp] 723 / 0 AT3G62220 592 / 0.0 Protein kinase superfamily protein (.1) Lus10038042 [exp] 681 / 0 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1) Lus10009983 [exp] 675 / 0 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10026706 [exp] 486 / 4e-173 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025496 [exp] 485 / 8e-173 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 484 / 1e-171 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025498 [exp] 484 / 3e-171 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10029295 [exp] 462 / 7e-164 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 462 / 1e-163 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188600 [exp] 647 / 0 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 634 / 0 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 502 / 1e-179 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.007G124000 [exp] 489 / 3e-174 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G036300 [exp] 489 / 1e-173 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G059600 [exp] 476 / 3e-169 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 467 / 1e-165 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 271 / 1e-84 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 266 / 1e-82 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 266 / 2e-82 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10004524 pacid=23182185 polypeptide=Lus10004524 locus=Lus10004524.g ID=Lus10004524.BGIv1.0 annot-version=v1.0 ATGAGCTGCTTCAGCTGTTGTGAAGAGGATGAGATCCATAAAACTGCAGACAGTGGTGGTCAATATCCCTTAAAGAGTTCCGGAGGAAATATGGGAGGGC AATATGCCTCAGAAGCAGCACCAAAAGGTGCTCAAGTTATCAAAATCCAGCCCATTGAAGTGCCTGCATTACCATTAGATGAATTGAAGGAAGTTACTGA GAACTTTGGGACTAATTCTTTGATTGGAGAAGGCTCTTACGGAAGAGTGTATTATGGAACTCTGAAGACTAGCCAAGCTGCAGCAATTAAAAAGCTAGAT TCCAGCAAGCAGCCAGATGATGAATTCCTAGCTCAGGTCTCGATGGTGTCAAGGCTTAAACATGAATACTTCGTCCAATTGCTCGGGTATTGTGTTGAAG GCGGTTCTCGTGTTCTTGCCTATGAATTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTGTTAAAGGTGCACAGCCAGGTCCGGT CCTTATATGGGCTCAGCGTGTTAAAATAGCTGTTGGGGCTGCAAAGGGCCTTGAATATTTGCATGAGAAGGCTGACCCGCACATCATCCATCGTGACATT AAGTCCAGTAATGTCTTGATATTTGACGACGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCTCCAGATATGGCAGCACGGCTTCACTCTA CTCGTGTACTCGGCACATTTGGCTATCATGCTCCTGAATATGCCATGACAGGGCAGTTAAATGCCAAGAGTGACGTGTATAGTTTTGGAGTCGTGCTTCT TGAGCTGTTGACTGGTCGTAAACCTGTTGATCACACACTGCCACGTGGACAGCAAAGTCTGGTCACATGGGCTACACCTAAACTGAGTGAGGACAAGGTT AGGCAATGCGTTGATACAAGACTAGGAGGAGAGTATCCACCAAAAGCGGTAGCAAAGATGGCTGCAGTTGCTGCATTGTGTGTGCAATACGAAGCGGATT TCAGACCGAACATGAGCATCGTGGTGAAAGCGCTACAACCTCTATTAAACGCAAGGGCTGGACCTGCAGGTGAAACTCCAAACGTCTGA
AA sequence Show only first row Show all	>Lus10004524 pacid=23182185 polypeptide=Lus10004524 locus=Lus10004524.g ID=Lus10004524.BGIv1.0 annot-version=v1.0 MSCFSCCEEDEIHKTADSGGQYPLKSSGGNMGGQYASEAAPKGAQVIKIQPIEVPALPLDELKEVTENFGTNSLIGEGSYGRVYYGTLKTSQAAAIKKLD SSKQPDDEFLAQVSMVSRLKHEYFVQLLGYCVEGGSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLIWAQRVKIAVGAAKGLEYLHEKADPHIIHRDI KSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKV RQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARAGPAGETPNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	0	1
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	1.0	0.8599
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	2.0	0.8569
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	2.4	0.8385
AT1G29760			Putative adipose-regulatory pr...		Lus10007323 [exp]	2.8	0.8253
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	4.7	0.7879
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	5.5	0.8137
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	7.1	0.7909
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10039119 [exp]	7.2	0.7560
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	7.7	0.8061
AT1G27290			unknown protein		Lus10037037 [exp]	7.7	0.7873

Compare expression of checked genes

Lus10004524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.