Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01840 345 / 3e-115 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT4G18160 281 / 1e-89 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT5G46370 261 / 6e-82 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT1G02510 163 / 1e-46 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G55630 147 / 6e-40 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT5G46360 100 / 2e-23 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2) AT4G22200 43 / 0.0005 AKT3, AKT2/3 potassium transport 2/3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015265 [exp] 281 / 4e-85 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10004611 [exp] 268 / 1e-84 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004538 [exp] 255 / 2e-80 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10028722 [exp] 143 / 3e-37 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10001912 [exp] 140 / 4e-37 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10003089 [exp] 118 / 3e-30 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004417 [exp] 112 / 4e-27 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 108 / 2e-26 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10028602 [exp] 107 / 1e-25 AT1G80960 50 / 1e-06 F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187600 [exp] 397 / 7e-136 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.014G113700 [exp] 397 / 1e-135 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.001G352500 [exp] 298 / 2e-96 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.011G079100 [exp] 291 / 1e-93 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G059200 [exp] 244 / 4e-76 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.005G203000 [exp] 241 / 6e-75 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.001G366800 [exp] 155 / 1e-42 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004600 [exp] 150 / 4e-41 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 139 / 4e-37 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 134 / 3e-35 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF07885 [flax] [poplar] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Lus10004525 pacid=23182175 polypeptide=Lus10004525 locus=Lus10004525.g ID=Lus10004525.BGIv1.0 annot-version=v1.0 ATGGAAAATGAGCCATTCATCTCTTCTTCTTCTTCAAAGCCACAACTTCAACCAATCCCAGAGCACCAACGCCTCTCTTCCTTCTCTTCTCTCCCTCAAC CCCTCCTCTTCCATGAAATCCAGCCTCTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGTCATCCTCCTCCTCCTCCTCCTCCTCCTCCGCTACTCCTCA CAATCTCAGAAAAACCCGCTCCCTCCATCGCTCCAGGACAGCTCCGGCTATGGTAGTCATGCGGGATTTAAAACCAGCCACCTCCAAAACCTCTCAATTC CCTCAACCAAACTCCGATTCCACTACTTCCATCATCCGGCGAGCTCTTTTCCTGCTATCTCTCTACCTCTTCTTAGGAGTCGTCATCTATTCCCTCAATC GAGACCATTTCTCCGGCACCGAGACTCACCCCGTCGTGGACGCGCTCTACTTCTGTATAGTCACCATGTGCACCATCGGCTACGGCGACATTGCTCCGCT GACTCCGATCACCAAAGCATTCGCATGCGTTTTCGTACTCTTCGGTTTCGGGTTCATCGACATACTGCTCAGCGGTGTCGTCAATTACGTCCTCGATTTG CAAGAGCGGATGATTCTCGCAGGGATTCAGATTGGTTCGAATCATCATCATCATCATCGGCGGGGTAGGTTTTCGGCTAGGAATTACATCGTGGATGTTG AGAAAGGGAGGATGAGGATAAGGTTGAAGGTTGGTTTGGCGCTTGGGGTGGTGGTTTTGTGCGTTGGAATGGGGGCTTTGGTTTTGTATTCAGTGGAGGA TATGGATTGGATTGATTCGATTTACTTGGCGGTCATGTCTGTTACCACTGTGGGTTATGGTGATAGGGCGTTCAAGACATTGCCAGGGAGGTTGTTTGCA GCTGCTTGGCTGCTTGTTTCGACCTTGGCGGTGGCGAGAGCTTTTCTTTATCTTGCGGAGTTCAGAGTTGATAAGAGGCATCGGAGGATTACCAATTGGG TTCTGCATAGGGACATCACTGTTGAGGATTTGCTTGCTGCTGATATGAACAACACTGGTTTCATTAGATGGCTCAAGTCTGCGATCTCGAAGAGAGTGGA GTCTCTTCATCTGGTCTATGATGTGGCGATACGGGATTCTGATAACTGTTTTTTTGCGGAGGAAGGTTACAATCACATTAAAACTCCAGCGGGAATGTAT GATATTAGGTTCCTGAAATCCTTGCGCTTGGCTTATGTTGATGCCGGGGATGAGATTCTTCAACATTTCATTGCCAATTTCCCCCTGCTTGAAGTGTTCG CTGTGAAACGGTCGTATTGCCTAAGAAAGCTCGAGGTCGTAGGTTCTTCGGACTCACCACTGCCATTGAAGCACTTGGAAGCAACATTCTGCAACTTTTT GGCATCTGTGGAGATTGATCACGCCCCTCACCTCGAGCGGTTGATACTTGATGGTGTGGGTTGTGACCGTGTGAAGGAATTCTGA
AA sequence Show only first row Show all	>Lus10004525 pacid=23182175 polypeptide=Lus10004525 locus=Lus10004525.g ID=Lus10004525.BGIv1.0 annot-version=v1.0 MENEPFISSSSSKPQLQPIPEHQRLSSFSSLPQPLLFHEIQPLPPPPPPPPPPSSSSSSSSSSATPHNLRKTRSLHRSRTAPAMVVMRDLKPATSKTSQF PQPNSDSTTSIIRRALFLLSLYLFLGVVIYSLNRDHFSGTETHPVVDALYFCIVTMCTIGYGDIAPLTPITKAFACVFVLFGFGFIDILLSGVVNYVLDL QERMILAGIQIGSNHHHHHRRGRFSARNYIVDVEKGRMRIRLKVGLALGVVVLCVGMGALVLYSVEDMDWIDSIYLAVMSVTTVGYGDRAFKTLPGRLFA AAWLLVSTLAVARAFLYLAEFRVDKRHRRITNWVLHRDITVEDLLAADMNNTGFIRWLKSAISKRVESLHLVYDVAIRDSDNCFFAEEGYNHIKTPAGMY DIRFLKSLRLAYVDAGDEILQHFIANFPLLEVFAVKRSYCLRKLEVVGSSDSPLPLKHLEATFCNFLASVEIDHAPHLERLILDGVGCDRVKEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Lus10004525 [exp]	0	1
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	2.8	0.8884
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	4.9	0.8676
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	7.3	0.8640
AT2G38480			Uncharacterised protein family...		Lus10001266 [exp]	9.8	0.8709
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	10.3	0.8723
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	17.5	0.8536
AT1G28540			unknown protein		Lus10025433 [exp]	18.5	0.8578
AT5G59960			unknown protein		Lus10004947 [exp]	19.9	0.8650
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	20.9	0.8424
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	24.7	0.7973

Compare expression of checked genes

Lus10004525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.