Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62160 427 / 1e-147 HXXXD-type acyl-transferase family protein (.1) AT5G07080 173 / 6e-49 HXXXD-type acyl-transferase family protein (.1) AT2G25150 168 / 3e-47 HXXXD-type acyl-transferase family protein (.1) AT1G28680 157 / 6e-43 HXXXD-type acyl-transferase family protein (.1) AT3G47170 155 / 2e-42 HXXXD-type acyl-transferase family protein (.1) AT5G41040 154 / 6e-42 HXXXD-type acyl-transferase family protein (.1.2) AT2G23510 153 / 9e-42 SDT spermidine disinapoyl acyltransferase (.1) AT5G17540 148 / 9e-40 HXXXD-type acyl-transferase family protein (.1) AT3G03480 147 / 2e-39 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT3G48720 145 / 5e-39 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 176 / 8e-50 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10035189 [exp] 167 / 1e-46 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10020332 [exp] 165 / 1e-45 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 164 / 2e-45 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 163 / 2e-45 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 160 / 3e-44 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 160 / 4e-44 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10005661 [exp] 158 / 8e-44 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 158 / 1e-43 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113600 [exp] 509 / 5e-180 AT3G62160 526 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G326300 [exp] 164 / 7e-46 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 164 / 7e-46 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.019G043600 [exp] 164 / 1e-45 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 161 / 2e-44 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G126400 [exp] 159 / 1e-43 AT5G07080 374 / 9e-126 HXXXD-type acyl-transferase family protein (.1) Potri.008G071200 [exp] 157 / 4e-43 AT2G40230 544 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 157 / 6e-43 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.010G186300 [exp] 155 / 2e-42 AT2G40230 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 155 / 2e-42 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10004527 pacid=23182180 polypeptide=Lus10004527 locus=Lus10004527.g ID=Lus10004527.BGIv1.0 annot-version=v1.0 ATGGAGACACTCACCGTTACTAGGCACAGCCGAACTCTGGTTCACCCATTTCGTCCGACTCCATCCCACCGACTCGACCTCTCCTTCATAGACAGCTTAC CAGTCCTCCGATGCAATGCCCGGACGCTTCACGTGTTCAGGTCCGGCGGCCAAGATGCTGCAACCGTCATTCGAGGAGCCTTGTCCAGGGCACTTGTCCC TTACTACCCTCTAGCCGGAAGGCTTAAGAAAACCCCACAGAGTGCCGGCAGCCTTCTCCAGGTTGATTGTTCGGCACAAGGCGTATGGTTTGTGGAGGCT TCGGTGGATAATTCAATTACACTCGATGAAGTGAATTACTTCGACCACGACAATGTCGCTTCCATACCTTATGATCATCTTCTTCCTGACGGAGCTGAAC AGGAAGCGGAATTAGAACCCTTAGTTCAGATGCAGGTGACTCAATTCGCTTGCGGCGGATTTGTGATAGGGCTGATCTTCTGCCACACAGTCTGCGACGG GCTTGGTGCAGCACAGTTCCTAAACGCCGTCGGAGAAATTGCCAGAGGACTTGCTTCCGATCGTCTCTCCGTTTCCCCTGTTTGGCAGCGAGACTTCTTC CCACAACAACAACAGCCACAACTCAATTCATCCGCCTCACTACCACCACCGATAATCCCTAGCTACAAGCTCGAACAGACGAACATCGACATCTCAATCG ACCAAATCAATCAAGCGAAGAAGCAATTCCACTCATCCACCGGAAGCGGCGGAAAGACTTGCTCAACCTTCGAGATTGTGGCCGGCAGCCTCTGGAAGCA CAGAACGGCGGCCATAGACCTGGATCCCGACTCCGAAGTACAGCTTGTTTTCTTCGCCAACTGTCGACAGCTCGTGGAGCCTCCGCTTCCGACGGGGTTC TACGGGAACTGTTTCTTTCCGGTGAAGCTCACGGCGTCGAGCGATTACCTGAAAACGGCGGCGGTTTCCAATGTGATCGAATTGATACAAGAAGCCAAGG GGAAGCTTAGGGCGGAGTTCGACAAGTACGTGAAGGGAGAGAAAGGGAACGATGACGAGGATCCATTTATGTCCCCGTTGGCGTATACGATGCTGTTCAT ATCGGAATGGGGGAGGTTAGGGTTTAACGACGTTGATTACGGGTGGGGCCCGCCGGTGAACGTGGTTCCGATTCAGGGATCTGGTGTCATACCGGTGGGA ATCGTAGGGTGGTTGCCGTCTGCGAGGAGAGGCGTACGGTTGATGACGTGGTGTGTTGAGGAAACTCATCGTCCGGCTTTGATCCGGGGAATGGCCATTG AATGA
AA sequence Show only first row Show all	>Lus10004527 pacid=23182180 polypeptide=Lus10004527 locus=Lus10004527.g ID=Lus10004527.BGIv1.0 annot-version=v1.0 METLTVTRHSRTLVHPFRPTPSHRLDLSFIDSLPVLRCNARTLHVFRSGGQDAATVIRGALSRALVPYYPLAGRLKKTPQSAGSLLQVDCSAQGVWFVEA SVDNSITLDEVNYFDHDNVASIPYDHLLPDGAEQEAELEPLVQMQVTQFACGGFVIGLIFCHTVCDGLGAAQFLNAVGEIARGLASDRLSVSPVWQRDFF PQQQQPQLNSSASLPPPIIPSYKLEQTNIDISIDQINQAKKQFHSSTGSGGKTCSTFEIVAGSLWKHRTAAIDLDPDSEVQLVFFANCRQLVEPPLPTGF YGNCFFPVKLTASSDYLKTAAVSNVIELIQEAKGKLRAEFDKYVKGEKGNDDEDPFMSPLAYTMLFISEWGRLGFNDVDYGWGPPVNVVPIQGSGVIPVG IVGWLPSARRGVRLMTWCVEETHRPALIRGMAIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	0	1
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	1.0	0.9973
AT4G18425			Protein of unknown function (D...		Lus10013969 [exp]	1.4	0.9947
AT3G27210			unknown protein		Lus10011366 [exp]	3.3	0.9851
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	3.5	0.9903
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	3.9	0.9919
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	4.6	0.9888
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	5.5	0.9902
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	6.5	0.9845
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	6.9	0.9889
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	7.7	0.9864

Compare expression of checked genes

Lus10004527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.