Plant FIBer expression Database

Lus10004528 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27510 243 / 8e-70 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G133900
[exp]
392 / 1e-125 AT4G27510 343 / 5e-107 unknown protein
PFAM info
Representative CDS sequence
>Lus10004528 pacid=23182192 polypeptide=Lus10004528 locus=Lus10004528.g ID=Lus10004528.BGIv1.0 annot-version=v1.0
ATGCCTACGCCGACTAATTTCCGACACTTGGTCGCCAAAGCTACCGGATTTCTTTCTGATGGATTTTCGTCGAGTGACAAGACTGTGAAGCCGTCGAATT
TGAAGAGACTGTACACGATTCTAGACCTCTTATCTTCGAAGGGTAAAAATTATCTTTTTGATTTCTCATCTACTTCCAAACCCTGCGACGCTGAGTTGGA
GATCGCTGGTCTGAAGTTGAAATGTAAAGACATTGGTTGTCTCTCTGATATCTTGTATGAAGAGCTCATCAGGAGATTCAATGACTTAATTTCTGCTCTA
AGTGATGCCCATGTAGGAGGAGAATGCCACTCCCTCAATCCACGAGCTTTTGGATCTGAAGTTGTGATATTGCTTCTGAGATGTTGTATGCTTTTGTTGC
CCTTAATGGAATATGACCAGAAACTTATGATGGAAAAGGGTGGCATTCTTCTCTCCATACTTCGAAGATTGTTCTCTGTCGAGTTTGGTGGTGCCGGTTT
TGTTGCTTTTCGGAGAGCAGATTCTTGTACTAGTTCTATCACTGACGAGCTTCTTGCTTCTCGTGGCAAGTTGAAACCTTTACTTGTACCGTGTACATAT
GTCTGTGCATTACTTGAGGTGTCTTGCTGCCGCAGTTTGACTTCAGGTTACAATCTTCAGGCTTTTGCAGATGAACTTTTGGTCCATAAACTGCTGGGAA
AATACTTGATGCGAATTGATTCTTCATCTTCCGGATGTGAAATACTATTCAAAGTCCATAATGTTAATCGTGGCATTGGAGCAGTGCTGGAGGTTATCTG
CGCTCATTTTATTATATCAGGTTTTGATGAGCCGGCATTTGAAGATGTAGCAAAAAGGTTGGTTTGGTTCCCTCTGAACAATGTGAGAACATCATCTGAA
ATCCGCATGCCTGCAGCCTTATCATTACTTGTCAACCCCATCATCTGTTCAGCACCTAAGCTGTTCCAGGCTTATTCAGTTTTATTGGCTACTGAAGCCA
CTGGCATTTCCAAGCCGTCTGAGAGTGATAAGGCAGAACTTTCATCTTTCGAGAACTACTTTGCAGCATATGAAAGGTCTTTCATCCTTTACACCAGATG
TGTGCCTAGTTTGCGTGTGGATGGACATCATTTATGTGCTTCTGGTTGCCATGAAAAATCGACGAGGCCGTGTCATCAACTAGATTTTGATTCGTTTCTA
CAGGCAGGCACAAGGGATAAATTATATAATCTCATTTCCAAGTTGAACAATAGCTGGGTTTTAAGTATGAGCAATACATCAGTTGGAGCCGAATCTAGTG
TCGTTGCTTCTTATGTTGCATATGTGAAGGAGAGCTTATGCTTATTCGAAGACTCTCGTAGAGATGAGGTATTGTCGATATTAACTTGCATAATACAAAG
ATGTTCCTCTGATGCCAGTGACAATTCACTTTGTCAGAGCAAAGAGGAAAAAACAAGCCCTGAAGACATGTTTTATCTTGCTTCCATCTTGAAGCTAATG
AGTAGCTCACTGCTACAAGCTATACGGGTTATGGGTAACCCAAGGTATCCAGGTAGTCTGAATTCCAGCAGAGGTTCCATAGTCAAAATCACTAGTCGTT
TCGAAGAGTTCAGCATCAGTTTACCAGTTCAGAAGTACTTGCATGAAATGATGGGGTCTGACCTAGTGAAGCATAAAGAATCCAAATTTATGCTTTTGCA
CTTTTCTGGCTTGCTCTTCTTCAGTTACAGTAGGAAACTTGATTTCCTAGTTAAGGACTGTTTATCAATGATCGTGGCATCATTAAGTTTTCTGCTCTTT
CAAGAGGGCAGCCTCAATGCACTACAGTTAGCAATTCGATCCACATTACAGCCATCTTTATCCGAGTCTCCTACTATCCAAAGGCCTCCAGCATTTCGTA
GTAATTGCGAGAAGATTGCGTATGAATTTCGAAACATACAAGAGATACACTTACGGGCAAACGTACGTTCCGAGAAGAGAAAAAAAAGAAGTGGAGAGGA
TAATACTGCTTCTTATGTCACAAGTATGGAGCAGGAAGAAGAGGAAGAGTATTGTGATGGTGAACCTTTCTTCAAGTCTTTGTATGGAGGAACAAAGGGC
TCTTCTGAATATGAAGATTTGACAGATTTCGTGGTGTGCACGGAGGGTAGAGACTACGATAGCTGGTTTAAAGTACGAAAAAGGTTCATGGCGTGGAAGA
AAAAGAAGGTCATGAATAGAAGAACGAAGAGAAGGAAAAATGTTCGTCAGTTGCTTGGCAAGTAA
AA sequence
>Lus10004528 pacid=23182192 polypeptide=Lus10004528 locus=Lus10004528.g ID=Lus10004528.BGIv1.0 annot-version=v1.0
MPTPTNFRHLVAKATGFLSDGFSSSDKTVKPSNLKRLYTILDLLSSKGKNYLFDFSSTSKPCDAELEIAGLKLKCKDIGCLSDILYEELIRRFNDLISAL
SDAHVGGECHSLNPRAFGSEVVILLLRCCMLLLPLMEYDQKLMMEKGGILLSILRRLFSVEFGGAGFVAFRRADSCTSSITDELLASRGKLKPLLVPCTY
VCALLEVSCCRSLTSGYNLQAFADELLVHKLLGKYLMRIDSSSSGCEILFKVHNVNRGIGAVLEVICAHFIISGFDEPAFEDVAKRLVWFPLNNVRTSSE
IRMPAALSLLVNPIICSAPKLFQAYSVLLATEATGISKPSESDKAELSSFENYFAAYERSFILYTRCVPSLRVDGHHLCASGCHEKSTRPCHQLDFDSFL
QAGTRDKLYNLISKLNNSWVLSMSNTSVGAESSVVASYVAYVKESLCLFEDSRRDEVLSILTCIIQRCSSDASDNSLCQSKEEKTSPEDMFYLASILKLM
SSSLLQAIRVMGNPRYPGSLNSSRGSIVKITSRFEEFSISLPVQKYLHEMMGSDLVKHKESKFMLLHFSGLLFFSYSRKLDFLVKDCLSMIVASLSFLLF
QEGSLNALQLAIRSTLQPSLSESPTIQRPPAFRSNCEKIAYEFRNIQEIHLRANVRSEKRKKRSGEDNTASYVTSMEQEEEEEYCDGEPFFKSLYGGTKG
SSEYEDLTDFVVCTEGRDYDSWFKVRKRFMAWKKKKVMNRRTKRRKNVRQLLGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G27510 unknown protein Lus10004528
[exp]
0 1
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Lus10026862
[exp]
1.4 0.9172
AT1G66310 F-box/RNI-like/FBD-like domain... Lus10034161
[exp]
2.0 0.8728
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Lus10020235
[exp]
2.0 0.9113
AT3G54460 SNF2 domain-containing protein... Lus10024158
[exp]
3.5 0.8905
AT5G51340 Tetratricopeptide repeat (TPR)... Lus10019124
[exp]
5.9 0.8610
AT2G24640 UBP19 ubiquitin-specific protease 19... Lus10020116
[exp]
7.7 0.8590
AT3G14750 unknown protein Lus10038143
[exp]
13.1 0.8513
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10003491
[exp]
13.3 0.8541
AT5G11860 SSP5 SCP1-like small phosphatase 5 ... Lus10015787
[exp]
14.0 0.8470
AT1G58110 bZIP Basic-leucine zipper (bZIP) tr... Lus10015457
[exp]
14.5 0.8242

Lus10004528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.