Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24430 45 / 6e-05 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT3G03200 44 / 0.0002 NAC ANAC045 NAC domain containing protein 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007204 [exp] 639 / 0 ND 43 / 2e-04 Lus10008240 [exp] 550 / 0 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10010074 [exp] 379 / 1e-119 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10008200 [exp] 345 / 2e-119 ND 43 / 6e-05 Lus10033281 [exp] 194 / 1e-58 AT1G71930 57 / 4e-09 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10022965 [exp] 193 / 6e-58 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033279 [exp] 171 / 2e-49 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10001309 [exp] 102 / 1e-24 ND / Lus10010294 [exp] 91 / 8e-20 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028700 [exp] 82 / 5e-17 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.016G027900 [exp] 77 / 1e-15 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.019G063000 [exp] 72 / 3e-14 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G028300 [exp] 71 / 3e-13 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.015G002900 [exp] 69 / 2e-12 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G029200 [exp] 63 / 3e-11 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.017G058100 [exp] 61 / 6e-10 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 59 / 2e-09 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G231300 [exp] 59 / 3e-09 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028900 [exp] 56 / 1e-08 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10004531 pacid=23182186 polypeptide=Lus10004531 locus=Lus10004531.g ID=Lus10004531.BGIv1.0 annot-version=v1.0 ATGGGGCCAAACAACCAATCATCCCAGACCGCAGATCTACTACCTGTTGGTTGCTGCTTCAAGCCAACAGAGGAGCAACTGGTAAGCCACTATCTCTTCA ATCATATTTCCGGATTGCCCTTGCAAAACCACCCGTTTTGCCCTGTTCCAGTTTTCTTCTGTGATCTGTATGGCTCTGAGGAACCATGGGAACTTTGGCA CCGATTCCAATCCCAAAATAGTTCTGGCCTTTCCACTGGAGATGATGTCTATTTGATCACAAAACTGAAGCAGAAGGTGTCTGGAAAACAATTGAAGCAG AAGAAGAAGATGGCTGGTATCAGTAATAAACAGTACTATGATCGATTGGTGGGAACCAGTGGGGGTAACTGGGATCGTTCTGATAAAGATTATAAACTTG AGGTCGATAGGGATGAGTTTGTAGGGATTCGTAAGAAATTCTCTTACAAAAATCGCGAATCCAAGCAACATGGGTTATGGCTCTTGTCAGAGTATTCGAT TAGTTATGATGGTGGGAAGACTTGCTCTGAAGATGTTATATGCATCCTCAAGGACTATAGAAAATCTGATGAATCAGCCACTACCAAAAAGAGAAAGTTC GAACAAGTGAATACTACTGCTACTGAGCTTCCTTCTTCTTCTTCTAAGGTTCCTAAGCTTGATGATGGTGCCACAAGCTCTGCAACCCTCATGCAGATGC AGACAGAAGAGATGGTGCCTATCTCTTTCGATTTCTCAATGCCATCTGCCCCAAACGTTCTAGATGGTTCTTCTTTGGGTGACATAATTCACAACAACGA GCTACTGCCCACAATTCCATCTCACCACTCGGTGGATAACACATCAGGATTTGAGAGTGGACAACTTGATATCAATGATATCTACATTGATGACGAGTCC ATTTGGGCACTCCTTGAGGATGACAAACAAGAGCCTGAAAATAGTGGACTGCTTGAGCAACTCCAATCACCTGTCATCAAACCAGTTCATCAGGTTCCTC TCGATCTCGATCTCCCTGTTACATGTTTCTCCTCTAATCCCTCTGATATTTTCCTTGATGATGAATTCATTCAGCGAATTTCGAGCCCCAGTTACATTCC TTGCTCCCTTGCTTCCGATTTCGGTCTTGAAATCAATCCATTTTCTGATTTTCATGACCCTTTCCAGTTTTAG
AA sequence Show only first row Show all	>Lus10004531 pacid=23182186 polypeptide=Lus10004531 locus=Lus10004531.g ID=Lus10004531.BGIv1.0 annot-version=v1.0 MGPNNQSSQTADLLPVGCCFKPTEEQLVSHYLFNHISGLPLQNHPFCPVPVFFCDLYGSEEPWELWHRFQSQNSSGLSTGDDVYLITKLKQKVSGKQLKQ KKKMAGISNKQYYDRLVGTSGGNWDRSDKDYKLEVDRDEFVGIRKKFSYKNRESKQHGLWLLSEYSISYDGGKTCSEDVICILKDYRKSDESATTKKRKF EQVNTTATELPSSSSKVPKLDDGATSSATLMQMQTEEMVPISFDFSMPSAPNVLDGSSLGDIIHNNELLPTIPSHHSVDNTSGFESGQLDINDIYIDDES IWALLEDDKQEPENSGLLEQLQSPVIKPVHQVPLDLDLPVTCFSSNPSDIFLDDEFIQRISSPSYIPCSLASDFGLEINPFSDFHDPFQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	0	1
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	1.0	0.9705
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	3.0	0.9622
AT3G55160			unknown protein		Lus10007253 [exp]	4.0	0.9691
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	4.2	0.9483
AT1G76740			unknown protein		Lus10028114 [exp]	5.3	0.9470
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	5.5	0.9547
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	7.1	0.9439
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	7.3	0.9450
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	8.2	0.9548
AT3G27130			unknown protein		Lus10012529 [exp]	11.7	0.9327

Compare expression of checked genes

Lus10004531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.