Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04940 409 / 7e-143 scramblase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010075 [exp] 638 / 0 AT2G04940 422 / 5e-148 scramblase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079500 [exp] 414 / 1e-145 AT2G04940 457 / 9e-162 scramblase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF03803 [flax] [poplar] Scramblase Scramblase
Representative CDS sequence Show only first row Show all	>Lus10004532 pacid=23182183 polypeptide=Lus10004532 locus=Lus10004532.g ID=Lus10004532.BGIv1.0 annot-version=v1.0 ATGAATTGGATCAAGGGTTCCGATTTCTTTACGAGGAACTTATTTGGTAGATATGCAATGCTGGCTGAAGCTGGAGGAGCTTGCTCTGGTTTACATATAA AACATGGGGTTGAATCCTTTTATAGAAGATTTCAACATAGTGCAGCTAATGATAGTCACTTGAGTAGAGACTTCCTTGCACGGCTGTGGGTTTTGGACAA GAAGGCGGAGAAATCTGCTAGGAAAGTAGTGAAGAAGTCCGCTAAATATAGGCAGTTTTCACAAAGTTCTCAACATGATGGTACAGTAGTTTTAGAGCAA CCTCCTCCCAGCCTGCCGTTGTCTGGTTATCTCAAGCCAACATCCTTGGAAGAAGCTCAAGTTGCACCTCTGCTTGCAAGATCCAATCTACTAATCACCA GGGATATTGAGTGGGCAAATCTTGTTCTAGGTTTTGAGCAGGAGAACCGTTATGCAGTCTTGGATGTTTGTCACCCCCAAGCACCTTCAGGTTTTATTCG CGAACAGAGTAATATGCTTGCTAGGCAGTTCCTTCGTACAAGACGTCCTTTTGTTGCCTTGATAACCGACGCCATGGGTAATGAGCTATTCAGGGTTCGG AGGCCTTATTGGTGGATAACTAGCTCAATTTATGCAGAGATCAATGGCAAGGAGGTTGGTGTGGTTCACAGACGTTGGCACCCATGGAGGAGGATCTATG ACTTGTACCTTGGGGACAAGCAATTTGCTGTAGTTGAAAATCCTGGGCTTTGGTATTGGACGTTTACATTGAAAGACATTGATGGAAAAGTGCTGGCTCA AATAGATCGTAATTGGAGGGGATTTGGATTTGAGATATTGACCGATGCTGGACAATACGTGATAAGGTTTGGAAGTCAGGAGACTGAACATTCAAGTCTG ATCGAAGAACTGGAAGTTGCTCGTCCTCTGAGTATCACCGAAAGAGCAATAACGGTTGCGTTGGCCATTTCACTGGACAATGACTACTTCTCAAGGCATG GTGGATGGTAA
AA sequence Show only first row Show all	>Lus10004532 pacid=23182183 polypeptide=Lus10004532 locus=Lus10004532.g ID=Lus10004532.BGIv1.0 annot-version=v1.0 MNWIKGSDFFTRNLFGRYAMLAEAGGACSGLHIKHGVESFYRRFQHSAANDSHLSRDFLARLWVLDKKAEKSARKVVKKSAKYRQFSQSSQHDGTVVLEQ PPPSLPLSGYLKPTSLEEAQVAPLLARSNLLITRDIEWANLVLGFEQENRYAVLDVCHPQAPSGFIREQSNMLARQFLRTRRPFVALITDAMGNELFRVR RPYWWITSSIYAEINGKEVGVVHRRWHPWRRIYDLYLGDKQFAVVENPGLWYWTFTLKDIDGKVLAQIDRNWRGFGFEILTDAGQYVIRFGSQETEHSSL IEELEVARPLSITERAITVALAISLDNDYFSRHGGW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	0	1
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	2.2	0.8627
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10022158 [exp]	2.6	0.8381
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	5.3	0.8514
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	5.5	0.8239
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017848 [exp]	5.7	0.8155
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	6.2	0.8180
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	6.7	0.8484
AT5G26880		AGL26	AGAMOUS-like 26 (.1.2)		Lus10015701 [exp]	7.9	0.8578
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	9.2	0.8171
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	10.7	0.8135

Compare expression of checked genes

Lus10004532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.