Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06000 517 / 4e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT5G65560 222 / 3e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 209 / 2e-60 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 209 / 5e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 206 / 2e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 206 / 5e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 205 / 1e-58 RPF2 rna processing factor 2 (.1) AT1G63330 203 / 3e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 205 / 6e-58 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63080 203 / 8e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004615 [exp] 1036 / 0 AT2G06000 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10003347 [exp] 378 / 2e-129 AT2G06000 248 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10008593 [exp] 201 / 2e-57 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 198 / 3e-56 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10042768 [exp] 200 / 4e-56 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10013841 [exp] 202 / 6e-56 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 201 / 8e-56 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 202 / 9e-56 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029737 [exp] 198 / 2e-55 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141800 [exp] 653 / 0 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.005G038400 [exp] 224 / 2e-65 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 218 / 8e-64 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 217 / 4e-63 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 217 / 5e-63 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046100 [exp] 216 / 2e-62 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 214 / 8e-62 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 211 / 1e-60 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 210 / 2e-60 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 207 / 1e-59 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004533 pacid=23159380 polypeptide=Lus10004533 locus=Lus10004533.g ID=Lus10004533.BGIv1.0 annot-version=v1.0 ATGACTCTCTTGTCATCATTCACTGCGCGGCCTTTCAAGGTTCGTGCCTTCTCCGCAATCGCCGCCCTTCGGATTCACACTCAAGGCGGCGGATCTCCGG AGAGTTCCGAAGCTTGGTTTGTTAAAGTTGCGTCGACGCTCTTTGCCGTCAATTCGGTTTCGTGTCTGCCGTATCTCCGTGCAAACCTGACTACTCCGTT GACTGCCTTCGAGGTGATTGAGAGGTTTGAGGACCGCCCTGAATTAGGTTTCAAGTTCTTGGAGTTCAGTAGATCGAATTTGAACCTCACTCATTCTTTC GCTACTTATAACTGGATGATAAGATCCTTTTGTCAAATGGGGCTGCATGATTTGGCACAAGTTTTGTTTGGTTACATGAGGAGCGATGGGCATTTGGCTG AAAGTAGTGACCTTTTGTGGTTCATGGTTACTACATTCGTGCATGCTCAGAGATTTGATGTTGCTCGCAAATTGTTGTCTGAGTTGCGGGGTTTGGGTGT TCAGATTACTCCATTTGTGTATAATAATCTTCTGAATGAGCTCGTCAAGTTGAATCAAGTGGACGAAGCTGTTGGTTTGTTCAAAGATTTTCTGGTGTTG GAGTCTTGTCCTGATACTTGGACTTTCAACATTCTTATCCGAGGTCTTTGCAGAGTAGGGGAGGTCGATAGAGCGTTTGAGTTCTTGAATGATATGAAGA GTTTTGGTTGTTCACCTGATATTGTTACTTACAATACTCTCATTAACGGACTCTGTAGGATTAATGACTTCGACAGAGGTCGAGGCTTGTTGCAGGAACT TCAATCGGGGAGCCATTGTTGTCCAGATGTTGTGAGTTATACATCGATCATGTCCGGTTTCTGTAAATGCGGTCAGTTGGAAGATGCATATAGTCTCTTT CAGGAGATGGTTGGGAGTGGGATCAAACCCAGTATCATCACTCTTAACGTGCTGATCGACGGCTATGGGAAGATCAACGACATGGTTGCAGCAGAAGCTG TTTACGAAAAGATGGACCAGTTCAGTTGCTCTCCTGATGTGGTTACTTTCACTTCCTTAATCGATGGTTACTGTCGATGTGGACAGGTTAGCCTCGGTAT GAAGCTCTGGGATGTGATGAGAGTAAGAAACATGATTCCTAATGCGTATACATACGCTGTTCTAATTAACGCTCTTTGCAAGGAGAATAGACTTCACGAG GCCCGCAGACTTTTGACAGAACTGAAGTTTAGTAACGTTGTAGCAAAGGCATTCATGTACAATCCTGTAATTGATGGGTTTTGCAAAGCTGGCAATGTCG ATGAGGCAAATGTCATTGCAAAAGAGATGGAAGAGACGTTTACCATACTTATTATCGGCCACTGTATGAAAGGTAGAATGTCTGACGCAACCGGTCTTCT CAATAAGATGCTGACCATCGGTTGCTCTCCTGATAACATTACCATTAGTTCATTGACATCCCGCCTTTTGAAAGCTGGGTTACCTACCGAAGCATTCCGA GTAAAGCAAATGCTATTGGAAGACTTGAACTCGGGACGGTCAAGTTATGGAAAAATTGCCCCTCTTGTTGTGAGAGCTAGAGATATCCCTGTGGCAGCTT GA
AA sequence Show only first row Show all	>Lus10004533 pacid=23159380 polypeptide=Lus10004533 locus=Lus10004533.g ID=Lus10004533.BGIv1.0 annot-version=v1.0 MTLLSSFTARPFKVRAFSAIAALRIHTQGGGSPESSEAWFVKVASTLFAVNSVSCLPYLRANLTTPLTAFEVIERFEDRPELGFKFLEFSRSNLNLTHSF ATYNWMIRSFCQMGLHDLAQVLFGYMRSDGHLAESSDLLWFMVTTFVHAQRFDVARKLLSELRGLGVQITPFVYNNLLNELVKLNQVDEAVGLFKDFLVL ESCPDTWTFNILIRGLCRVGEVDRAFEFLNDMKSFGCSPDIVTYNTLINGLCRINDFDRGRGLLQELQSGSHCCPDVVSYTSIMSGFCKCGQLEDAYSLF QEMVGSGIKPSIITLNVLIDGYGKINDMVAAEAVYEKMDQFSCSPDVVTFTSLIDGYCRCGQVSLGMKLWDVMRVRNMIPNAYTYAVLINALCKENRLHE ARRLLTELKFSNVVAKAFMYNPVIDGFCKAGNVDEANVIAKEMEETFTILIIGHCMKGRMSDATGLLNKMLTIGCSPDNITISSLTSRLLKAGLPTEAFR VKQMLLEDLNSGRSSYGKIAPLVVRARDIPVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	1.4	0.9015
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	3.2	0.8675
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	3.7	0.8963
AT1G30960			GTP-binding family protein (.1...		Lus10023046 [exp]	5.5	0.8435
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10015604 [exp]	6.0	0.8259
AT1G29320			Transducin/WD40 repeat-like su...		Lus10023861 [exp]	8.5	0.8525
AT1G42440			unknown protein		Lus10013232 [exp]	8.8	0.8749
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	9.2	0.8667
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	10.6	0.8691
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	12.4	0.8457

Compare expression of checked genes

Lus10004533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.