Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44020 469 / 6e-165 Mitochondrial transcription termination factor family protein (.1) AT4G02990 280 / 2e-90 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G21710 130 / 2e-33 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G38160 112 / 2e-28 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT1G78930 107 / 9e-26 Mitochondrial transcription termination factor family protein (.1) AT4G14605 107 / 1e-25 Mitochondrial transcription termination factor family protein (.1) AT5G55580 95 / 2e-21 Mitochondrial transcription termination factor family protein (.1) AT5G54180 75 / 1e-14 PTAC15 plastid transcriptionally active 15 (.1) AT2G03050 69 / 3e-13 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G34620 69 / 4e-13 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004614 [exp] 612 / 0 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 306 / 1e-100 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 222 / 1e-68 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 129 / 6e-33 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 102 / 2e-24 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10032061 [exp] 102 / 1e-23 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035227 [exp] 101 / 1e-23 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 99 / 8e-23 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 95 / 2e-21 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116700 [exp] 478 / 3e-168 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 310 / 3e-102 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 127 / 2e-32 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 114 / 4e-28 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 103 / 3e-25 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.007G001800 [exp] 102 / 5e-24 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G170300 [exp] 100 / 2e-23 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.001G361800 [exp] 92 / 2e-20 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 77 / 2e-15 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1) Potri.015G005200 [exp] 76 / 6e-15 AT5G54180 493 / 3e-171 plastid transcriptionally active 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10004534 pacid=23159371 polypeptide=Lus10004534 locus=Lus10004534.g ID=Lus10004534.BGIv1.0 annot-version=v1.0 ATGCCTGTTGTCAAGTTCCTTCGCGGACTTGATGTCGAGAAGCAAGATATCGGATATGTACTCCTAAAGTATCGTGAGCTTCTTGGCTTTAAACTCGAAG GAACGATGAGTACCTCTGTCGCTTATCTTGTTAGTATTGGTGTTAGTCCGAGAGATATTGGACCGATGGTGACTCAGTATCCGTTCCTTTTGGGGATGCG AGTAGGGACTGTGATCAAGCCGTTTGTTGATTACATGGTCTCTTTAGGCTTGCCAAAAAAGATCATAGCTAGGATGCTGGAGAAGCGGCCGTACATCCTT GGATACAATCTTGAAGAAACTTTGAAGCCGAATATAGAGTGTTTGGTCAGTTTCGGTGTTAGGAAAGAATCGCTAGGTTTTGCTACAGCGCAATACCCGC AGATTCTCAGGTTGCCTTTGAAAGCGAAGCTTTCTTCTCAACAATACTTCTTCGGTTTGAAGCTCAAGATAGACCCGGACGGTTTTGCACAGGTGATAAA GAAGATGCCTCAGATTGTAAGCCTTAGTCAACAAGTGATAGTGAAACCTTTTCAGTTCCTTCTCGAGAGGGGTATCCCGGCTCACGACGTAGCAAAGATG GTCGTCAAGTGTCCTCAGTTGCTTGCGTCGAGAGTCACACTGATGAAGAATAGCTTCTATTTTTTCAAGAGCGAAATGGGAAGGCCGGTGAAAGTGCTTG TTGATTTCCCAGAGTTTTTCACTTACAGCTTGGAGTCGAGAATCAAACCCAGATATCAAGTGATGAAAAGCAAAGGTGTAAGGTGTTCACTTGATTCCCT CCTGAACTGTAGTGACCAGAGATTTGAGGAAATGCTGCAAATCGGTGGTAGTCTTGAATCTGAGATGATGGCTGGTCCTTGTTTCAGTATGGGAGGGAAG TTGCAGTTACCGAGGGACGAGATTGTTTCGGAATCGGACGAGGAAGATGATGATGAGAGTGATCACGAGATACTCTATAGGCGCACTGTATCTATCTGA
AA sequence Show only first row Show all	>Lus10004534 pacid=23159371 polypeptide=Lus10004534 locus=Lus10004534.g ID=Lus10004534.BGIv1.0 annot-version=v1.0 MPVVKFLRGLDVEKQDIGYVLLKYRELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPFLLGMRVGTVIKPFVDYMVSLGLPKKIIARMLEKRPYIL GYNLEETLKPNIECLVSFGVRKESLGFATAQYPQILRLPLKAKLSSQQYFFGLKLKIDPDGFAQVIKKMPQIVSLSQQVIVKPFQFLLERGIPAHDVAKM VVKCPQLLASRVTLMKNSFYFFKSEMGRPVKVLVDFPEFFTYSLESRIKPRYQVMKSKGVRCSLDSLLNCSDQRFEEMLQIGGSLESEMMAGPCFSMGGK LQLPRDEIVSESDEEDDDESDHEILYRRTVSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44020			Mitochondrial transcription te...		Lus10004534 [exp]	0	1
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	5.5	0.8219
AT1G02290			unknown protein		Lus10018907 [exp]	6.9	0.7944
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	7.2	0.7964
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	11.2	0.7917
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	12.0	0.7925
AT2G45520			unknown protein		Lus10009304 [exp]	12.6	0.7864
AT5G40660			ATP12 protein-related (.1)		Lus10000142 [exp]	13.4	0.7932
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10021327 [exp]	14.7	0.7797
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	15.9	0.7586
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	18.0	0.7699

Compare expression of checked genes

Lus10004534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.