Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44020 206 / 8e-65 Mitochondrial transcription termination factor family protein (.1) AT4G02990 123 / 2e-33 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G36000 40 / 0.0003 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT4G09620 39 / 0.0005 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004614 [exp] 277 / 4e-92 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 115 / 1e-30 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 114 / 4e-30 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10026571 [exp] 42 / 7e-05 AT4G38160 252 / 4e-83 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116700 [exp] 224 / 2e-71 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 123 / 3e-33 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 42 / 0.0001 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10004535 pacid=23159387 polypeptide=Lus10004535 locus=Lus10004535.g ID=Lus10004535.BGIv1.0 annot-version=v1.0 ATGAGTTTATCATTGCTCAGTAGAAGGAATTTGTTCTCTGTATTCTGCAACCCCAGATCTCTCTCCCCGCTACAATTTTGCCAAAACTCTAACCCTCTGC TACACGGATTAAAGGTTTTGAATCATCTTGCCTCATTCTCCACCCAGTCCTCCTCCAAATTCCCAGAATACGAGATGCCTTCAGTCACTTGGGGTGTTAT ACAGGGAAAGAAAGAGAAGTTAGTGAATCGTGTCATAATATGTGATTATCTCAAGACTTTAGGAATCATTCCTGATGAACTGGAGACTCTCGAGCTCCCG TCCACCGTTCAGGTTATGAAAGAACGGGTTGAGTTCTTGCAGAGGTTGGGATTGACTATCGATGATTTCAACGAGTATCCTTTGATCCTAGGTTGCAGTG TTAGGAAGAACATGATCCCTGTATTAGGCTACTTGGAGAAAATCGGCATAAGTAGGTCGAAACTCGGGGAGTTTGTCAAGAGCTATCTCAAGTTATGCAC ATGA
AA sequence Show only first row Show all	>Lus10004535 pacid=23159387 polypeptide=Lus10004535 locus=Lus10004535.g ID=Lus10004535.BGIv1.0 annot-version=v1.0 MSLSLLSRRNLFSVFCNPRSLSPLQFCQNSNPLLHGLKVLNHLASFSTQSSSKFPEYEMPSVTWGVIQGKKEKLVNRVIICDYLKTLGIIPDELETLELP STVQVMKERVEFLQRLGLTIDDFNEYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFVKSYLKLCT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44020			Mitochondrial transcription te...		Lus10004535 [exp]	0	1
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	2.8	0.7746
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	4.2	0.8117
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	11.4	0.7786
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	14.5	0.7378
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	15.5	0.7883
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10028841 [exp]	16.2	0.7895
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	20.5	0.7769
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	27.1	0.7632
AT3G22430			unknown protein		Lus10041204 [exp]	32.2	0.7444
AT1G51310			transferases;tRNA (5-methylami...		Lus10039111 [exp]	48.3	0.7049

Compare expression of checked genes

Lus10004535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.