Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18905 182 / 2e-55 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G35370 177 / 7e-54 Transducin/WD40 repeat-like superfamily protein (.1) AT4G18900 173 / 4e-52 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004613 [exp] 290 / 3e-98 AT4G35370 384 / 1e-130 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001126 [exp] 229 / 6e-71 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10015348 [exp] 164 / 1e-48 AT4G18905 527 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037439 [exp] 41 / 0.0004 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041271 [exp] 40 / 0.0006 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019833 [exp] 203 / 2e-63 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 202 / 9e-63 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G110300 [exp] 44 / 3e-05 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10004536 pacid=23159393 polypeptide=Lus10004536 locus=Lus10004536.g ID=Lus10004536.BGIv1.0 annot-version=v1.0 ATGAAGAGAACGAAGAGCTGTTGGATTCCGGGGCTTCAGAAAGAAGTGGAGAATTTCAGCTCTGGAAATGGAGACGTTTATTATCCCAACAACACAATGG ACCCTCATATCAGGGATAACGATGATGATGATTCGGAAGAGGAAGAGGATATGACTATTAGGCCAACAGATGGAGTAATAGTTTGTGCACATACTGAAGA TGATCTCAGTCATCTCGAGGTTTGGATATATGAAGATTGTGATGATGGTGAACCAAATAAGTACATTCACCATGATATTATCCTTTCAGCGTTTCCCCTG TGCTTAGCTTGGCTTGATTGCCCAATTAGAGGAGGGGAAAAAGGGAACTTCATTGCTGTTGGTTCAATGGAGCCTGTTATTGAAATATGGGATCTTGACA GGGTGCAAGCAGTTGCATGGAATCACCATGATCCACAAATTCTTCTTAGTGGATCTTTCGATCGATCGGTTGTAATGAAAGATGCTAGGAACCCTATGCA CCCAGGAATCAGATGGTCGGTTACAGCTGATGTCGAAAGCTTGGCATGGGATCCACACAATAGACACAACTTTGTGGTGAGTGTTTCTTGA
AA sequence Show only first row Show all	>Lus10004536 pacid=23159393 polypeptide=Lus10004536 locus=Lus10004536.g ID=Lus10004536.BGIv1.0 annot-version=v1.0 MKRTKSCWIPGLQKEVENFSSGNGDVYYPNNTMDPHIRDNDDDDSEEEEDMTIRPTDGVIVCAHTEDDLSHLEVWIYEDCDDGEPNKYIHHDIILSAFPL CLAWLDCPIRGGEKGNFIAVGSMEPVIEIWDLDRVQAVAWNHHDPQILLSGSFDRSVVMKDARNPMHPGIRWSVTADVESLAWDPHNRHNFVVSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	0	1
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	2.0	0.7800
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	2.0	0.7919
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	7.3	0.7471
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	7.3	0.7734
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	9.9	0.7356
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10040171 [exp]	15.2	0.6760
AT1G16040			unknown protein		Lus10032921 [exp]	17.2	0.6917
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	17.7	0.7555
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	19.0	0.7112
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	21.2	0.7615

Compare expression of checked genes

Lus10004536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.