Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29860 166 / 5e-50 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT4G18170 159 / 1e-46 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT5G46350 151 / 1e-43 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT2G47260 143 / 1e-40 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT5G49520 144 / 2e-40 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G69310 133 / 5e-37 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT3G62340 125 / 5e-34 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT2G44745 111 / 1e-29 WRKY WRKY12 WRKY family transcription factor (.1) AT1G13960 116 / 2e-29 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT5G26170 109 / 3e-29 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004612 [exp] 340 / 2e-117 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 148 / 4e-42 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10017067 [exp] 146 / 2e-41 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10036891 [exp] 136 / 1e-37 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10037094 [exp] 135 / 3e-37 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10036401 [exp] 114 / 1e-30 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10012547 [exp] 110 / 2e-30 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10011346 [exp] 112 / 3e-30 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10003128 [exp] 111 / 3e-30 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352400 [exp] 199 / 2e-62 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.011G079300 [exp] 199 / 2e-62 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.005G203200 [exp] 167 / 5e-50 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.002G059100 [exp] 166 / 3e-49 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.002G193000 [exp] 147 / 2e-42 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G118200 [exp] 147 / 4e-42 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.008G103300 [exp] 147 / 1e-41 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.010G147700 [exp] 144 / 2e-40 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.010G160100 [exp] 137 / 1e-38 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.008G094000 [exp] 137 / 2e-38 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10004537 pacid=23159404 polypeptide=Lus10004537 locus=Lus10004537.g ID=Lus10004537.BGIv1.0 annot-version=v1.0 ATGGTCGTCGACCACGACTACAACAACCTGAGCTTCGCCGACTGCCTTCATGGCTCCGTCGACTACACCTCCCTCTCCAAAGCATTCGACCTATCTCCCC CTCCCGCCGCCGACCACCACGGCGGCAACAACAACAACAACGGCCCGCTCACGCCCAACTCCTCCGGGTCGTTCTCGTCGGAGGAGGACTCCGGCAGCAT TTGTAATGGGAAGAAAAGCTCCGAAACTGGTGCCGCCGACAACAAGGCGGCGTCAACGGCGGCGGCGGCGGGGGAGAAGAAGGCGGGAAAAGGGGAGAAG AGGAAGAAGGAAGCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTAGAAGATGGCTATCGATGGAGGAAATACGGCCAGAAAGCTGTCAAGA ATAGTCCTTATCCACGGAGCTACTACAGGTGTACGACGCAGAAATGCGGGGTGAAGAAGAGGGTAGAGAGGTCATTCGAGGATCCGTCAACGGTAATAAC AACCTACGAAGGCCAACACAACCACCCACTCCCTTCCACGCTCCGAGGAAACGCGGCTGCTGCCGCGGCCATGTTCTCTCACTCCATCCTAAGCACCCCT AATTCCGCCACCTTCCCGGCCGAGTTCCTGCTCCACTTGTCTGGCCAAAACCACCAAGCCTCCGCTGCTGCCGCTACTTCCTCCTCTGCCGTGGGGTCCA TGTACCATCATCAACAACAACAACATTTCGGCCAACAACCACAGCAACAACAACAACAGTACTACGGTCAGCATTTGTCTGACTATGGGCTTTTGCAGGA TGTCGTGCCGAATTCCATGTTCTTTAAACAGGAGGAGTCATCTTGA
AA sequence Show only first row Show all	>Lus10004537 pacid=23159404 polypeptide=Lus10004537 locus=Lus10004537.g ID=Lus10004537.BGIv1.0 annot-version=v1.0 MVVDHDYNNLSFADCLHGSVDYTSLSKAFDLSPPPAADHHGGNNNNNGPLTPNSSGSFSSEEDSGSICNGKKSSETGAADNKAASTAAAAGEKKAGKGEK RKKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERSFEDPSTVITTYEGQHNHPLPSTLRGNAAAAAAMFSHSILSTP NSATFPAEFLLHLSGQNHQASAAAATSSSAVGSMYHHQQQQHFGQQPQQQQQQYYGQHLSDYGLLQDVVPNSMFFKQEESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004537 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	1.4	0.9653
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	2.0	0.9646
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	5.5	0.9581
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	6.5	0.9602
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10010992 [exp]	7.7	0.9384
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Lus10004399 [exp]	11.0	0.9599
AT5G39150			RmlC-like cupins superfamily p...		Lus10033767 [exp]	11.6	0.9444
AT1G20030			Pathogenesis-related thaumatin...		Lus10004410 [exp]	16.7	0.9264
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10029533 [exp]	23.9	0.9421
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020493 [exp]	25.8	0.9332

Compare expression of checked genes

Lus10004537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.