Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18160 263 / 1e-84 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT5G46370 252 / 4e-80 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT4G01840 229 / 1e-71 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT1G02510 147 / 2e-41 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G55630 132 / 2e-35 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT5G46360 124 / 3e-33 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004611 [exp] 345 / 2e-116 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10015265 [exp] 333 / 6e-107 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10004525 [exp] 236 / 3e-73 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10001912 [exp] 126 / 7e-33 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004417 [exp] 99 / 4e-23 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 96 / 5e-23 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 91 / 5e-21 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079100 [exp] 311 / 1e-103 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.001G352500 [exp] 285 / 4e-93 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G187600 [exp] 247 / 6e-79 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.014G113700 [exp] 246 / 2e-78 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.005G203000 [exp] 208 / 9e-64 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G059200 [exp] 203 / 6e-62 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.008G004600 [exp] 135 / 2e-36 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.001G366800 [exp] 133 / 9e-36 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 130 / 8e-35 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 123 / 6e-32 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF07885 [flax] [poplar] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Lus10004538 pacid=23159402 polypeptide=Lus10004538 locus=Lus10004538.g ID=Lus10004538.BGIv1.0 annot-version=v1.0 ATGGAGAAAGAGCCACTTCTCACGTTTGTAACACGGAGCCCTAGATTCCGGCCACCGCCGCACAGCCGCCGCCCCCCCCCGCCGCTGCCGCCGTGCCTCT GCCCTCTCCCGGAGAAGGACGAACTCTCCTTACCAATCCCCATGACTCCCTCCGCTCTCAAGGACCGCCTCATCTTCGGCCCTTTCACTCCTTCTTCCAA CGTCGACGCCCTAAATCTCCTGCAATCCTCCCCGCGAACAACCTCCTCCTCCCCCGCAGCAACCTCCTGTTCCAATCCCGACTGCGGCGGCTTAGCGGCC CGCCACTGCCTTGCTCCACCGCAGTCGCAGTCCCAACCGCCGTCTTCGTCCCCCCGCCGAAATCCAGATTCTCGAAGGCGCATCTCCACCGATGCCAAAC AGCCCCAGCAATGTCGGCAATCAACGAGATCCGCAACCAACATCCGCAAGATCCGACGCCTCAATTCGGGGAAAACTCGAGACGATTTCTCCGCCTCCCA AACGCATCCGATCGTGGACGCGTTCTACTTCTGCATCGTGACGATGTGCACGATCGGGTACGGGGACATCACGCCGAACAGCGCTGCAACGAAGCTCTTC GCCGTCCTGTTCGTCCTAGTCGGATTCGGATTCATCGACATCCTGTTATCCGGAATGGTCAGTTACGTCCTTGATCTGCAGGAGAGTTACCTCCTGAAAA GAGGCGAGAATTACTTCGTCGATGTGAAGAAAGGGAGGATGAGGATTCGGATGAAGGTCGGATTGGCGTTGGGGGTGGTTGTTCTTTGCATTGGAATTGG AGTTGCTGTGATGCATTTTATAGAGAGGCTTGGATGGGTTGATTCTTTGTATTTGTCTGTGATGTCTGTGACTACTGTGGGGTATGGAGATAGGGCTTTC GGATCGATGACCGGGAGGATATTTGCGTCGGTTTGGCTGCTGGTATCGACGCTGGCGGTGGCGAGGGCATTTCTTTACTTGGCGGAGGCTAGGGTTGATA AGAGGCAGAGGAGGATGGCCAAGTGGGTTCTTGGTCATGATATGACTGTTTCTGAGTTCTTGGCTGCTGATATTGATCATAATGGCTATGTCAGGTAA
AA sequence Show only first row Show all	>Lus10004538 pacid=23159402 polypeptide=Lus10004538 locus=Lus10004538.g ID=Lus10004538.BGIv1.0 annot-version=v1.0 MEKEPLLTFVTRSPRFRPPPHSRRPPPPLPPCLCPLPEKDELSLPIPMTPSALKDRLIFGPFTPSSNVDALNLLQSSPRTTSSSPAATSCSNPDCGGLAA RHCLAPPQSQSQPPSSSPRRNPDSRRRISTDAKQPQQCRQSTRSATNIRKIRRLNSGKTRDDFSASQTHPIVDAFYFCIVTMCTIGYGDITPNSAATKLF AVLFVLVGFGFIDILLSGMVSYVLDLQESYLLKRGENYFVDVKKGRMRIRMKVGLALGVVVLCIGIGVAVMHFIERLGWVDSLYLSVMSVTTVGYGDRAF GSMTGRIFASVWLLVSTLAVARAFLYLAEARVDKRQRRMAKWVLGHDMTVSEFLAADIDHNGYVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004538 [exp]	0	1
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10022633 [exp]	2.0	0.7875
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Lus10024065 [exp]	3.3	0.8137
					Lus10026794 [exp]	4.0	0.8030
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10002924 [exp]	15.4	0.6804
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10022808 [exp]	17.3	0.7952
					Lus10026444 [exp]	21.9	0.6945
AT1G26140			unknown protein		Lus10034406 [exp]	22.5	0.6952
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10003253 [exp]	22.5	0.7271
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	23.4	0.6975
AT5G03980			SGNH hydrolase-type esterase s...		Lus10009325 [exp]	24.4	0.7622

Compare expression of checked genes

Lus10004538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.