Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29850 197 / 2e-65 double-stranded DNA-binding family protein (.1.2.3) AT1G29810 47 / 1e-06 Transcriptional coactivator/pterin dehydratase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004609 [exp] 244 / 7e-84 AT1G29850 207 / 2e-70 double-stranded DNA-binding family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352600 [exp] 200 / 7e-67 AT1G29850 205 / 1e-69 double-stranded DNA-binding family protein (.1.2.3) Potri.011G078900 [exp] 52 / 5e-09 AT1G29810 201 / 3e-67 Transcriptional coactivator/pterin dehydratase (.1) Potri.001G352800 [exp] 53 / 1e-08 AT1G29810 224 / 3e-75 Transcriptional coactivator/pterin dehydratase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01984 [flax] [poplar] dsDNA_bind Double-stranded DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004540 pacid=23159410 polypeptide=Lus10004540 locus=Lus10004540.g ID=Lus10004540.BGIv1.0 annot-version=v1.0 ATGGTAGATTTGGTGTCCAAGAAGTGTGTTCCATGCAACTCAAAGGATATGCAACCCATGACTGAAGAAAGTGCATCTGAGATGATGCCTAAGGCCGACC CGGAGCTGGAAGCAATTCGACAGAGGAGGATGCAGGAGCTAATGGCTCAACGTGGCGCGGCGGGAAGTCACTCTAGTCAGCATAACCCTGAACAACAGAA AGCTCAAGATGATGCTAAGAGGGAGGCCGAAGAGCGTAGGCAGATGATGCTGAGCCAGATTGTATCTGCTGAAGCCCGAGAGAGAAGAAAGAATGATCAC TATGTCTCATCTCTCATGAGCAATTCATGCCTTTGTGCAGTTGCTAGAATAGCGTTGGTTAAACCTGAAAAGGCCAGAGGCGTTGAAGACGTTATCCTCA GAGCTGCTCACATGGGTCAGATAGCTGAGAAGGTTTCGGAAGAGAGGCTTATCTCATTGCTGGAGCAGATAAACACCCAAACATCGAAACAAACCAAAGT CACAATCCAGAGGCGTCGAAGTGTTCTAGACGACGATGACTGA
AA sequence Show only first row Show all	>Lus10004540 pacid=23159410 polypeptide=Lus10004540 locus=Lus10004540.g ID=Lus10004540.BGIv1.0 annot-version=v1.0 MVDLVSKKCVPCNSKDMQPMTEESASEMMPKADPELEAIRQRRMQELMAQRGAAGSHSSQHNPEQQKAQDDAKREAEERRQMMLSQIVSAEARERRKNDH YVSSLMSNSCLCAVARIALVKPEKARGVEDVILRAAHMGQIAEKVSEERLISLLEQINTQTSKQTKVTIQRRRSVLDDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	0	1
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	1.4	0.8938
AT4G04614			unknown protein		Lus10006902 [exp]	1.7	0.8706
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	5.3	0.8487
AT2G44020			Mitochondrial transcription te...		Lus10004534 [exp]	5.5	0.8219
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	6.3	0.8714
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	6.5	0.8591
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	6.5	0.8578
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10018168 [exp]	6.6	0.8321
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	6.7	0.8563
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	6.9	0.8533

Compare expression of checked genes

Lus10004540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.