Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33520 318 / 2e-104 MOS2 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) AT4G25020 229 / 9e-71 D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004607 [exp] 808 / 0 AT1G33520 396 / 8e-135 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Lus10005161 [exp] 43 / 0.0004 AT1G55460 596 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129700 [exp] 381 / 7e-129 AT1G33520 345 / 9e-115 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Potri.003G104200 [exp] 363 / 7e-122 AT1G33520 339 / 2e-112 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Potri.010G204900 [exp] 47 / 2e-05 AT1G55460 561 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10004541 pacid=23159367 polypeptide=Lus10004541 locus=Lus10004541.g ID=Lus10004541.BGIv1.0 annot-version=v1.0 ATGAAACTGTCATTCTCGATCCCTGGGAAATCATCTTCAGCCAAGTCTACTACGGCTAAGCCCATACTTGCTGCAGAAGATGGAGAACGTGAGGAGAAAC AGAGGGAGTTTGTGACGGAGTTTGATCCCTCGACTTCCCGTGTTTCACAAAAGAGGCCGAGCTATGTAATTCCTCCCAAGGAGAATGAATGGAGGCCTCA CAAGAGTATGAAGAATATCCACAACCTTGCATCTCTGGGATACGATAAATCAACTGACGACAACATCAGCTTTGAAGTAGCCGGTGACATGGCCGATGGC AGTGGCAGGAATGTGTCTTATGGGCTTACCGTTCGTCAGAGTGAAGATGGTGCTGCTTCTAATGATGGTAGCGGCAGTATATCTGCAAGACCAAACACTG ACAACATGCTTTTGGAGAAGCTGAAGTTTGATTTACATCGGCTTCCCGACGACCAAGGGGTCAAGGAGTTTGAGGATGTTCCGGTCGAAGGGTTCGGTGC AGCCTTACTTGCTGGTTATGGATGGAAAGAAGGAAGAGGTATTGGCAAGAACGCCAAGAACGATGTTGAAGTGAAGCAATATCACAAGAGAACAGGTAAA GAAGGACTAGGGTTTACTGCCACTGACTCTGAAATGATTAATGTCAAAGACAAGCAGAAGGAGAAAGGTGGAAACAAAGAGAAACATAGCGATAGAGATC GAAATTCTGAAGACGGGTTTCCTGTTGGTAAAATTGTGAGGGTGGTTGCTGGTTCGAGAGACGTTTTAGGTTGCAAAGCTACTGTCTTGGAGAGAGTAGG TAGTGATTGGCTGCGTCTGAAGCTTGCAAGAAGCGGCAAGGAAGTCGGGATTCCTGTTTCCGATATTGCAGCTTTGGACTCTGCAGAAGAAGACAAGTGC TTGAAGAAACTGAAAGAGCTGAAGATTCGAAGCGAAGAACGATCAAACAGTGGGAAGAGTGGAAAAGAGCACTCAAGAGGAACTGGGAAGAGAGATGTTG ATAGAGTAAAGGTGGAGAAAGAGAGAGGGACTCGGTGGCTAAGGAACCACATTCGGGTTAGGATCATAAGCAAAGACTTGAAGGGTGGCAGACTCTACTT GAAGAAAGCGGAAGTGGTCGACGTCGTGGGACCATACGTGTGCGATGTCTTGATGGATGAAAGTAGGGAGCTTGTGCAAGGAGTTGACCAAGACCTTCTC GAGACGGCATTGCCTCGTAGCGGAGGTCCGGTTCTAGTTCTTTATGGCAAACACAAGGGGGCGTATGGGAAGCTGGTTAAAAGGGATTTGGATGAGGGAA CTGCAGTTGTGCAGGATTTCCATACCCACGAATTCGTCAACGTCAAACTTGAGCAAATTGCAGCGTATATCGGGGATCCAAGTGATATTGGATATTGA
AA sequence Show only first row Show all	>Lus10004541 pacid=23159367 polypeptide=Lus10004541 locus=Lus10004541.g ID=Lus10004541.BGIv1.0 annot-version=v1.0 MKLSFSIPGKSSSAKSTTAKPILAAEDGEREEKQREFVTEFDPSTSRVSQKRPSYVIPPKENEWRPHKSMKNIHNLASLGYDKSTDDNISFEVAGDMADG SGRNVSYGLTVRQSEDGAASNDGSGSISARPNTDNMLLEKLKFDLHRLPDDQGVKEFEDVPVEGFGAALLAGYGWKEGRGIGKNAKNDVEVKQYHKRTGK EGLGFTATDSEMINVKDKQKEKGGNKEKHSDRDRNSEDGFPVGKIVRVVAGSRDVLGCKATVLERVGSDWLRLKLARSGKEVGIPVSDIAALDSAEEDKC LKKLKELKIRSEERSNSGKSGKEHSRGTGKRDVDRVKVEKERGTRWLRNHIRVRIISKDLKGGRLYLKKAEVVDVVGPYVCDVLMDESRELVQGVDQDLL ETALPRSGGPVLVLYGKHKGAYGKLVKRDLDEGTAVVQDFHTHEFVNVKLEQIAAYIGDPSDIGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004541 [exp]	0	1
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015281 [exp]	5.0	0.8098
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	6.3	0.8346
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	8.1	0.8249
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	8.5	0.7889
AT5G67490			unknown protein		Lus10000389 [exp]	8.9	0.7973
AT2G25720			unknown protein		Lus10042976 [exp]	11.3	0.7667
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	14.5	0.8213
AT5G03990			unknown protein		Lus10016362 [exp]	14.7	0.8112
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015282 [exp]	15.7	0.7318
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	16.7	0.7969

Compare expression of checked genes

Lus10004541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.