Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29370 509 / 7e-168 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 504 / 7e-166 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 281 / 2e-82 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 70 / 5e-12 Kinase-related protein of unknown function (DUF1296) (.1) AT3G07660 50 / 7e-06 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 45 / 0.0002 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT1G22080 43 / 0.0008 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004604 [exp] 1326 / 0 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 876 / 0 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 785 / 0 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10000188 [exp] 425 / 6e-141 AT1G29350 305 / 6e-96 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007339 [exp] 94 / 2e-19 AT1G29370 79 / 5e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 67 / 3e-11 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 60 / 6e-11 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 52 / 2e-06 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10036414 [exp] 52 / 3e-06 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078800 [exp] 848 / 0 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 832 / 0 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 216 / 3e-58 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.005G202851 [exp] 121 / 3e-28 AT1G29370 57 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 57 / 8e-08 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 56 / 2e-07 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.002G217000 [exp] 56 / 2e-07 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G170700 [exp] 52 / 2e-06 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10004543 pacid=23159400 polypeptide=Lus10004543 locus=Lus10004543.g ID=Lus10004543.BGIv1.0 annot-version=v1.0 ATGAGTGGTAAAGGCGGCGGCGGTGAGAGGAACCCTGGCGGAAAAGGTGGTAATGGAATCTCCGCCATACCTGCCGGCTCGAGGAAGGTAGTCCAGAGCT TGAAAGAGATTGTCAACTGTCCCGAGGTGGAGATCTACGCTACGCTTAAGGAGTGTAACATGGACCCTAATGAAGCCGTTAATCGACTCCTTACTCAAGA GAAGCGCAGCTGTGCCACTGATGACCATGATCCTTTCCGTGAAGTTAAGAGCAAGCGAGAGAAGAAGAAAGAGAATAAGGATACGACAGACTTCAGGCCC CGTGGTGCAAATAACATAACACATCGTGGCGGCAGGGGTGTCTCAGACCACTATGCCTCAGATCGGTATGGGCGTGGTGGATCAAGCAATTATGCCTCAG CTGAATCTGGTGGTATGCATAGTAAGCCTGCTTACAGGAAGGAAAATGGAGCACATGCCTATGCGGGTTCTACCTCTTATGCATCTGCCACTGCAGGAAG CCAAGGTGGACGCCGAGCTCAATATACCAGTGACTATGCAAGTGCTGAAAATAAAACACCAACAGTAAGTGTAGGTGATGGGGTTTCTTCGTCAGTACAG CATACTTCTGGATTTCAATCTGCATGGATTGGGGTTCCAGGTCAAAAATCAATGGCAGATATTGTGAAAATGGGGAGGCCTCAGGCTAAGGCAGCCTTAC CCAACCACACTGCTATTGAACAGCAAGAATGGGCACCTCTTCCATCTGAACACAATGCTCTCAAGGTGCCAGAAATGCGGAGCGACGTAGAAGCTTCTGA AAATCAGCATGCTTATTCCAATAATGAATGGCCATCATTTGAGCAACCATCTGGTGCTAACGTGTCATTCTTTAAGGAGGCACTGTCAGAGTCTGAGTTG TATGAAAACCCATCAAGCATAGCTTTAAATGCAGAACCTGAGAATGTAAGGTCCGAGATAGATGACGTTGAATCTGATGAGGACGAAACTCTTGATGAGA GGCAAGTGGAGCTACCTTCTGTGTCCAGTAGACAGATCCAAGAGGACAGTACTGGAGGTTCCTCCTTATTTGTCAATGATCGATACGAGAATATTAACTC CTACCAGTCTCACAGACAGCCTTTTGAGCACAATGAAGCTGAAGACAGCTCTTCATCTGTGGCTGCAAATTTACAGCAATTGAGCTTACAGAATGATGAT AAGGTGGTACCACCTGAAGAAGATAGCCCTGTTGTAATTATTCCAAATCATCTGCAAGTTAATGCTCAAGACTGTTCACACTTGAGTTTCGGCAGCTTTG CCTCTGCCAGAAATTCAGGTTTGTCAGAGCCATTTGCATCTAGGCCCTTAGAAGATAACTTGGATGAGACGCCTGAACCGGTAGAAGCCCCATCAGCAGG GCACTCGGATGCTAGAGATGCTGATTACTATGTGGATGAGCATCTAAGGAATGCTGCTGATGATAATTTAGTCCATAGAACAAGTATAAATGCTGGGAAC TATGAGTCTCCTTCAGTTCCTCAACCACAAGTCTTGAAGGAGGAAACGGAGGAAGCTGCTCAGGGAAATCAATATGCCTATGCTTCTACGCCTGGATATA ACTATGAGAACACTCAGAACTTGGATGCTGCTTTTAACAGTCAACAGCAAAGCTCTCAGATGCAGAATATGGCTGCCTTCTCAAGCGTAATGCAGGCGTA TTCGAATGCGTTGCCTAGTGCATTGTTGGCTTCAAATATGCCAACTGGGAGGGAGCCTGACCTTCCATATTCGCCTTTCCCGGCTACTCAATCTATGCCT ACAAAGTACGGCACCAGCGCCTCATCTATTAGCGGTCCAAGCATGTCCATGCCAGAGGCTTTGAGAGCATCCAGCATTTCGACACCTCAGCAACAGCAAG CCCAGCAATCACTTGGTGGTGCTGCTGTCGCCACGGGGCCTGCTCTTCCGCAACACCTTGTCCATCCGTACTCACAACCTACGGTTCCCTTGGGCCATTA CGCTAACATGATTAGCTATCCGTTTATGCCTCAAAGCTATGCATATATGCCATCAGCCTTCCAGCAAGCCTTTGCAGGCAATAACACGTACCATCAGTCT CTGGCGGCCGTTCTCCCTCAGTACAAGAACAGTGTTTCCGCAAGTAGCTTACCCCAGTCTGCTGCTGTTCCACCTGGCTATGGGTTTGGGAATTCGACGA GCATCCCTGCTGCGAATTTCCCTGTTAACCAACCCGCTGCCCCAGCCGGCACAACTCTTTCGTATGACGATATGTTGAGTTCCCAGTACAAGGATAACAG CCATTTGATGTCTCTGCAACAGAACGAGAACTCAGCCATGTGGCTTCAGGGGCACGGTTCGAGGGCCATGTCAGCAGTCCCAGCGAACTCATACTACAAC TTCCAAGGGCAGCAAAACCAGCAGCAACAGCAGCAGCCATCGGGGTTCCGTCAAGGCCAGCAACAGCAACCGTCCCAGCAGCAGCATTTCGGCGGTGCTC TAGGGTACCCTAACTACTACCATTCCCAGGCAGGCATTTCGATGGATCATCTTCAGCAGCAGCAGCAGCAAATGCAACAGCAGAACGCGAGGGACGGATC CCTAAGCAATGCTCAGCAAGGCCAGGGCCCGAAGCAGAACCAACAACAGCTATGGCAAAACAGTTACTGA
AA sequence Show only first row Show all	>Lus10004543 pacid=23159400 polypeptide=Lus10004543 locus=Lus10004543.g ID=Lus10004543.BGIv1.0 annot-version=v1.0 MSGKGGGGERNPGGKGGNGISAIPAGSRKVVQSLKEIVNCPEVEIYATLKECNMDPNEAVNRLLTQEKRSCATDDHDPFREVKSKREKKKENKDTTDFRP RGANNITHRGGRGVSDHYASDRYGRGGSSNYASAESGGMHSKPAYRKENGAHAYAGSTSYASATAGSQGGRRAQYTSDYASAENKTPTVSVGDGVSSSVQ HTSGFQSAWIGVPGQKSMADIVKMGRPQAKAALPNHTAIEQQEWAPLPSEHNALKVPEMRSDVEASENQHAYSNNEWPSFEQPSGANVSFFKEALSESEL YENPSSIALNAEPENVRSEIDDVESDEDETLDERQVELPSVSSRQIQEDSTGGSSLFVNDRYENINSYQSHRQPFEHNEAEDSSSSVAANLQQLSLQNDD KVVPPEEDSPVVIIPNHLQVNAQDCSHLSFGSFASARNSGLSEPFASRPLEDNLDETPEPVEAPSAGHSDARDADYYVDEHLRNAADDNLVHRTSINAGN YESPSVPQPQVLKEETEEAAQGNQYAYASTPGYNYENTQNLDAAFNSQQQSSQMQNMAAFSSVMQAYSNALPSALLASNMPTGREPDLPYSPFPATQSMP TKYGTSASSISGPSMSMPEALRASSISTPQQQQAQQSLGGAAVATGPALPQHLVHPYSQPTVPLGHYANMISYPFMPQSYAYMPSAFQQAFAGNNTYHQS LAAVLPQYKNSVSASSLPQSAAVPPGYGFGNSTSIPAANFPVNQPAAPAGTTLSYDDMLSSQYKDNSHLMSLQQNENSAMWLQGHGSRAMSAVPANSYYN FQGQQNQQQQQQPSGFRQGQQQQPSQQQHFGGALGYPNYYHSQAGISMDHLQQQQQQMQQQNARDGSLSNAQQGQGPKQNQQQLWQNSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29370			Kinase-related protein of unkn...		Lus10004543 [exp]	0	1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10042734 [exp]	3.5	0.8854
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	6.7	0.8551
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	8.0	0.8646
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	11.3	0.8149
AT2G25970			KH domain-containing protein (...		Lus10020998 [exp]	11.5	0.8398
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	13.0	0.8541
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	13.7	0.8342
AT1G20060			ATP binding microtubule motor ...		Lus10034537 [exp]	20.1	0.8494
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Lus10015690 [exp]	20.4	0.8624
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	20.8	0.8208

Compare expression of checked genes

Lus10004543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.