Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21065 434 / 6e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G06540 389 / 7e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 382 / 4e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 382 / 5e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 381 / 1e-125 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G47530 375 / 6e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 369 / 4e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 368 / 1e-120 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 366 / 4e-120 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 361 / 1e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013319 [exp] 413 / 1e-138 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 411 / 5e-137 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 397 / 7e-132 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 380 / 2e-125 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 375 / 4e-123 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039388 [exp] 367 / 8e-121 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010385 [exp] 367 / 2e-120 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 367 / 4e-120 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 365 / 1e-119 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 418 / 5e-140 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G252400 [exp] 401 / 2e-135 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G065500 [exp] 396 / 8e-132 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 390 / 3e-129 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G135400 [exp] 388 / 1e-128 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 386 / 6e-128 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 386 / 2e-127 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 381 / 1e-125 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 380 / 2e-125 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 384 / 9e-125 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004544 pacid=23159403 polypeptide=Lus10004544 locus=Lus10004544.g ID=Lus10004544.BGIv1.0 annot-version=v1.0 ATGCTTTTGAATCATCCGATGTTTGGGTACCGGGTAACCTTTGCCTACAACACCCTCATCCGAGCTCACGCAGCTTCCTCGCCATACTTGGCCATTTCCC TTTTCCGCAACATGCGCCGGCGCCGTCCATCCATTCCGATGGATAACTTCACTTTCCCGTTCGTACTCAAGGCATGTTCTCGCCTCCGGATCGGCGTGCA CCTCCACTCCGTGATTCTGAAGATGGGGTTCGATTCCGACGTCTACGTGCGTAACTCTCTGATAAGTGTTTACGGCGCGTGCGGCAAACTGGTGGATGCA CTCAACGTGTTCGACGAAATGCCTGAGAAGAACGACGTCATCTCTTGGTCTTCGATGATCGCCTGCTTTGTCGATAATGGTTCCGTGCAAGAAGCACTGG CTCTGTTTCAACGGATGCAGATTGAAGGTAAGGTGAAGCCTGATGAGGTGACGCTGCTTAGTGTCGTCTCCGCCATTTCAGTGATCGGAGCATTGGATTT GGGGAGATGGATTGATGTTTACGTTTCAAAGAATGGCTTAACTCTCACTGTTGCATTGGGTACCGCGTTGATCGATATGTTCTCGCGGTGCGGATCGATA AACGATTCGATCAGAGTGTTTTATCGGATGCCTGAGAGAAATGTTAGAACCTGGACGGCGTTGATCAACGGGTTAGCAGTTCATGGTCGGAGCAGAGAAG CATTGGAGCTTTTCCATGACATGAAGAAAGTTGGTTTCCAGTATGATCACATCACATTCAGTGCTGCTTTAGTTGCTTGCAGTCATGGTGGTCTAGTCAA CGATGGGTGGCGAATATTCCGGTCCATCGAGGAAGAACACGACATGGAACCGAATATGGAGAATTATGGCTGTATGGTTGATCTCCTCGGTCGTGCAGGA TTGCTCGACGATGCGTTGGAGTTTGTTGAACAAATGCCGTGTAAACCAAATGCGATCATTTGGAGGACCTTACTCGGAGCTTGTGTGAATCATAACAGTA CTGCAATGGCTGATAAAGTGAAGCAGAAGGTATTTGACTTAGATCCTTATCACGATGGAGATTACGTACTTCTATCGAATGCTTATGGCGGAACAGGCAA GTACGTGAAGAAGGCGGAATTGAGAGCATCAATGCGAGAGAAGAGGATCTCGAAAAGCCCCGGTCATAGCTTGCTTGTCGTTGGTGATGAGATACATGAG TTTCTTTCAGGGGATGATTCTCATCATCTGGAATCAATGCACGTTAAGAGTTTCTTACAGAAGCTGATTATTGATCTCGGAGTCGAAGAAGGTTATAAGG CGTATACGAACAATGTGTTCCATGACATTGAGGATGAAGAGAAAGAGCAGAGCATCGGATTTCACAGCGAGAAATTAGCCGTTGCGTTCGCTCTCGTTAG CTTCGAGGATAGTAGAAGGACGATACGGATCATGAAGAATCTGCGAACCTGTCGTGACTGTCATTCCTTCATGAAGAGAGTATCTCGTAAATTCGGCAGG GAAATCGTTGTCAGGGATCGGAACCGGTTCCATCATTTCAGAGATGGAGCTTGTTCTTGCCAGGACTATTGGTGA
AA sequence Show only first row Show all	>Lus10004544 pacid=23159403 polypeptide=Lus10004544 locus=Lus10004544.g ID=Lus10004544.BGIv1.0 annot-version=v1.0 MLLNHPMFGYRVTFAYNTLIRAHAASSPYLAISLFRNMRRRRPSIPMDNFTFPFVLKACSRLRIGVHLHSVILKMGFDSDVYVRNSLISVYGACGKLVDA LNVFDEMPEKNDVISWSSMIACFVDNGSVQEALALFQRMQIEGKVKPDEVTLLSVVSAISVIGALDLGRWIDVYVSKNGLTLTVALGTALIDMFSRCGSI NDSIRVFYRMPERNVRTWTALINGLAVHGRSREALELFHDMKKVGFQYDHITFSAALVACSHGGLVNDGWRIFRSIEEEHDMEPNMENYGCMVDLLGRAG LLDDALEFVEQMPCKPNAIIWRTLLGACVNHNSTAMADKVKQKVFDLDPYHDGDYVLLSNAYGGTGKYVKKAELRASMREKRISKSPGHSLLVVGDEIHE FLSGDDSHHLESMHVKSFLQKLIIDLGVEEGYKAYTNNVFHDIEDEEKEQSIGFHSEKLAVAFALVSFEDSRRTIRIMKNLRTCRDCHSFMKRVSRKFGR EIVVRDRNRFHHFRDGACSCQDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10004544 [exp]	0	1
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017484 [exp]	76.4	0.4973
AT3G55820			Fasciclin-like arabinogalactan...		Lus10040220 [exp]	78.3	0.5177
AT1G47790			F-box and associated interacti...		Lus10011197 [exp]	79.7	0.5140
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10037409 [exp]	86.5	0.5141
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	255.9	0.4366

Compare expression of checked genes

Lus10004544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.