Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46390 471 / 6e-164 Peptidase S41 family protein (.1.2) AT4G17740 150 / 3e-40 Peptidase S41 family protein (.1.2) AT3G57680 142 / 5e-37 Peptidase S41 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004601 [exp] 722 / 0 AT5G46390 619 / 0.0 Peptidase S41 family protein (.1.2) Lus10004402 [exp] 160 / 4e-43 AT4G17740 610 / 0.0 Peptidase S41 family protein (.1.2) Lus10023704 [exp] 158 / 1e-42 AT4G17740 597 / 0.0 Peptidase S41 family protein (.1.2) Lus10040494 [exp] 145 / 5e-38 AT3G57680 692 / 0.0 Peptidase S41 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078700 [exp] 475 / 7e-166 AT5G46390 575 / 0.0 Peptidase S41 family protein (.1.2) Potri.008G173900 [exp] 163 / 9e-45 AT4G17740 699 / 0.0 Peptidase S41 family protein (.1.2) Potri.006G055400 [exp] 143 / 2e-37 AT3G57680 668 / 0.0 Peptidase S41 family protein (.1) Potri.010G063400 [exp] 66 / 6e-13 AT4G17740 174 / 3e-53 Peptidase S41 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [flax] [poplar] PDZ-like PF00595 [flax] [poplar] PDZ PDZ domain CL0127 [flax] [poplar] ClpP_crotonase PF03572 [flax] [poplar] Peptidase_S41 Peptidase family S41
Representative CDS sequence Show only first row Show all	>Lus10004545 pacid=23159406 polypeptide=Lus10004545 locus=Lus10004545.g ID=Lus10004545.BGIv1.0 annot-version=v1.0 ATGAGGAGCTTATTCTGCAGCTGTTCAGCTACGCTGCCGTCGCCGGAGCTATACCCGCGGCCACCGATTAGAAGATTTCCAAGCGTCCTTCTGGAGGCGG ATAGATTAGCTAAGAAAGCCGTGATCGGAATTCTCACCGGAGCTCTCTCTTTCAATTTACTGATCACTTCTCCGGCCGCCATCGCTTTGGATACTCCAAC CTTACAATCACCGCCGTCACCGGCGCCTGCTCTCTCCGAGTACTGCCGCGAAGAAGCAGCAGCAGCGGCGGAAGTAGTAGCAATTCAACGATCGGGACAG CGGGTGGCGACGAACGAGAAGATTGTGGAGGAAGCGTGGGAGATCGTCAATGGAAGTTTCCTCGACGTCGCTCGACATCGATGGACGCCTGAAACTTGGC AGCGGAAGAAGGAAGATATCTTAAACAGCTCAATTCAGTCGAGGTCCAAAGCTCACGACATAATAAGAAGGATGCTTTCTAGCTTGGGAGATCCGTACAC TCGTTTTCTTTCTCCTGCGGAGTTCTCGAGGATGGCGAGGTATGACATGACTGGAATTGGGATAAACCTCAGGGAAGTTGCAGGAGAGAATGGAGAAGTG AAACTTAGAGTGTTGGGAGTCTTACTGGATGGACCTGCAAATGCTGCTGGTGTGAGACAGGGAGATGAGATCCTGGCTGTAAATGGAGAGGAAGTTGAAG GGAAATCTGCGTTCGAAGTGTCATCTATGTTGCAAGGCGCGAACGAAACCTTCGTGACGATCAAGGTGAAGCATGGAAAATGTGGACCTGTTCACTCCCT AGATGTTCAGAGACAAGTTGTTGCCAAAACCCCGGTCTTCTACCGGTTGGAACAGATGGACAACGGCAACATCGCGGTTGGCTATGTGCGGCTGAAAGAA TTCAACGCACTGCCAAGAAAGGATTTGGCGGGGATTGAAGTTGCCAAGCTCTTTCTAAATGAAGGAGAAACAGGCGAATTGCAGGTGTTGGTTAACAGCA ACACTGCAAGTGCAAGTGAGATTGTAAGTAAAGTTTTCATGGAAGGAAAAGGACTAAGGAGACAAACTAATCCAAAATATTTGGTTTTGCTTCTACCTTC CAGTAATACGAGGTGTTCATTTCAGGTTGCCTCGGCACTCCACGACAACTGTAAAGCGGTTCTTGTAGGAGAACGAACTTTCGGCAAGGGTTTGATTCAA TCTGTTTTTGAACTCGACGATGGATCTGGAGTGGCTGTCACCGTCGGGAAGTACGTTACACCAAATCACATGGACATAAATGGCAATGGAATAGATCCGG ACTATCAAAATTTCCCAGCGTGGGGTGATGTTAACCAACGGCTATCTCAATGCAAAATGCGACAGCAGGGATAA
AA sequence Show only first row Show all	>Lus10004545 pacid=23159406 polypeptide=Lus10004545 locus=Lus10004545.g ID=Lus10004545.BGIv1.0 annot-version=v1.0 MRSLFCSCSATLPSPELYPRPPIRRFPSVLLEADRLAKKAVIGILTGALSFNLLITSPAAIALDTPTLQSPPSPAPALSEYCREEAAAAAEVVAIQRSGQ RVATNEKIVEEAWEIVNGSFLDVARHRWTPETWQRKKEDILNSSIQSRSKAHDIIRRMLSSLGDPYTRFLSPAEFSRMARYDMTGIGINLREVAGENGEV KLRVLGVLLDGPANAAGVRQGDEILAVNGEEVEGKSAFEVSSMLQGANETFVTIKVKHGKCGPVHSLDVQRQVVAKTPVFYRLEQMDNGNIAVGYVRLKE FNALPRKDLAGIEVAKLFLNEGETGELQVLVNSNTASASEIVSKVFMEGKGLRRQTNPKYLVLLLPSSNTRCSFQVASALHDNCKAVLVGERTFGKGLIQ SVFELDDGSGVAVTVGKYVTPNHMDINGNGIDPDYQNFPAWGDVNQRLSQCKMRQQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46390			Peptidase S41 family protein (...		Lus10004545 [exp]	0	1
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	4.8	0.8486
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	6.0	0.8030
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	8.5	0.8485
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	14.4	0.8356
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	14.6	0.8425
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	15.2	0.8355
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10015722 [exp]	15.9	0.7961
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	18.1	0.8195
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	21.4	0.8193
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	26.3	0.7978

Compare expression of checked genes

Lus10004545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.