Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30933 126 / 8e-35 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G09460 114 / 4e-29 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G35740 100 / 5e-26 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G26830 107 / 7e-26 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 105 / 2e-25 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G05430 99 / 2e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G05790 103 / 9e-25 O-Glycosyl hydrolases family 17 protein (.1) AT5G67460 100 / 6e-24 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 100 / 3e-23 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 99 / 5e-23 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004600 [exp] 367 / 2e-127 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015259 [exp] 224 / 4e-72 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10025379 [exp] 178 / 4e-54 AT1G29380 140 / 1e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10007342 [exp] 140 / 2e-39 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 138 / 1e-38 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10001516 [exp] 121 / 4e-31 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10031443 [exp] 119 / 2e-30 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10015151 [exp] 105 / 3e-25 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038529 [exp] 100 / 4e-25 AT4G05430 146 / 9e-45 Carbohydrate-binding X8 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353400 [exp] 209 / 1e-65 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G078500 [exp] 206 / 8e-65 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 147 / 2e-42 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.005G202400 [exp] 145 / 2e-41 AT2G30933 140 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.013G003500 [exp] 127 / 9e-33 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 127 / 1e-32 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.014G164600 [exp] 107 / 8e-29 AT5G35740 179 / 8e-60 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 107 / 3e-28 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 107 / 7e-28 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.006G016800 [exp] 105 / 8e-28 AT5G35740 156 / 1e-50 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10004546 pacid=23159366 polypeptide=Lus10004546 locus=Lus10004546.g ID=Lus10004546.BGIv1.0 annot-version=v1.0 ATGGGGTTTCGGCTCGTTCAGTCTTTCATTGTCTTTCTCCTGTATCTGCTCTTTGTTTCGGGTGCTAGTGTAGCAGAAGCAATGCAGGAAAAGGAATACA GGCGACTATTCCCGTCTTCTGCGATGTTCACCACCCAACTAGACACAACGGGAGGAGATGTTCCCACTGTCAACCCAACAGGTTTTGGCACAGGAGATGT GCCCATAGTCAACCCAACTAGTCCTCGTGGCATGACTCCCATTGAAGATCCTGTTGACTCGCCCCCTGCATCGACTACAATCCCCAACACACCACCCTCC CCCATGCCCGGAAACCCGCAGTCCACAACACCAACATCTCCAACGTTCGGAAACCCGCAGCCAACAACCCCAACATTTGGAAACCCGCAGCCCTCAACAC CAACATATGGGAACCCGCAGCCCACTACTCCATCAACGGGGTCAGGAGGGCAGTGGTGTATAGCTAGTCCAAGTGCTTCAGAAACTGCCTTGCAGGTGGC ACTTGATTATGCTTGCGGCTATGGTGGCGCAGACTGCTCCGCGATTCAGTCGGGATCGAGCTGTTACAACCCGAACACGGTCCGAGATCATGCTTCCTAT GCCTTCAATGCTTACTACCAGAAGAACCCAGCTCCTACTAGCTGTGCTTTTGGTGGAGCAGCACAACTCACCAGCACAGACCCAAGTAAGGGAAACTGTC ATTTCGCATCCTCAAAGTCCCAACCCAGCATGAGTCCGCCGGCAAACCCACCGCCAACATATTCATCCCCAACTGGTATGAGCCCTCCAACACCAACAAT GCCAGGGAATGGAGGGCCACCAGTAGGGTTCGGGCCACCATCAACATACGGTGTAGCAGAGCCAACAGGTCTTCCCAGCTCTTCAACGTCCCTTTCATCA AGCCTATTGATCCTCTGTTCAGTAATCGGAATTCTTGGATCATTCATCCTTCCAAACCATCTGTAA
AA sequence Show only first row Show all	>Lus10004546 pacid=23159366 polypeptide=Lus10004546 locus=Lus10004546.g ID=Lus10004546.BGIv1.0 annot-version=v1.0 MGFRLVQSFIVFLLYLLFVSGASVAEAMQEKEYRRLFPSSAMFTTQLDTTGGDVPTVNPTGFGTGDVPIVNPTSPRGMTPIEDPVDSPPASTTIPNTPPS PMPGNPQSTTPTSPTFGNPQPTTPTFGNPQPSTPTYGNPQPTTPSTGSGGQWCIASPSASETALQVALDYACGYGGADCSAIQSGSSCYNPNTVRDHASY AFNAYYQKNPAPTSCAFGGAAQLTSTDPSKGNCHFASSKSQPSMSPPANPPPTYSSPTGMSPPTPTMPGNGGPPVGFGPPSTYGVAEPTGLPSSSTSLSS SLLILCSVIGILGSFILPNHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	0	1
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	1.4	0.9740
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	1.7	0.9592
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	2.0	0.9643
AT4G18340			Glycosyl hydrolase superfamily...		Lus10042825 [exp]	3.5	0.9503
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	5.2	0.9390
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	6.3	0.9396
					Lus10009581 [exp]	6.6	0.9197
					Lus10020401 [exp]	7.7	0.9344
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10040258 [exp]	7.7	0.9111
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	7.9	0.9402

Compare expression of checked genes

Lus10004546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.