Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76750 111 / 8e-32 Protein of unknown function (DUF1278) (.1) AT2G21750 91 / 6e-24 Protein of unknown function (DUF1278) (.1) AT4G39340 87 / 2e-22 Protein of unknown function (DUF1278) (.1) AT2G21740 85 / 1e-21 Protein of unknown function (DUF1278) (.1) AT5G64720 52 / 8e-09 Protein of unknown function (DUF1278) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004598 [exp] 188 / 6e-62 AT1G76750 131 / 2e-39 Protein of unknown function (DUF1278) (.1) Lus10027057 [exp] 44 / 5e-06 AT1G76750 50 / 4e-08 Protein of unknown function (DUF1278) (.1) Lus10025591 [exp] 44 / 9e-06 AT1G76750 48 / 6e-08 Protein of unknown function (DUF1278) (.1) Lus10019549 [exp] 39 / 0.0005 AT5G51105 49 / 4e-08 Protein of unknown function (DUF1278) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191800 [exp] 124 / 3e-37 AT1G76750 115 / 7e-34 Protein of unknown function (DUF1278) (.1) Potri.009G077000 [exp] 124 / 6e-37 AT1G76750 127 / 6e-38 Protein of unknown function (DUF1278) (.1) Potri.001G353600 [exp] 122 / 3e-36 AT1G76750 120 / 1e-35 Protein of unknown function (DUF1278) (.1) Potri.001G306700 [exp] 99 / 3e-27 AT1G76750 113 / 3e-33 Protein of unknown function (DUF1278) (.1) Potri.001G306600 [exp] 83 / 9e-21 AT2G21740 112 / 7e-33 Protein of unknown function (DUF1278) (.1) Potri.011G078401 [exp] 52 / 2e-09 AT1G76750 54 / 3e-10 Protein of unknown function (DUF1278) (.1) Potri.006G062100 [exp] 38 / 0.0007 AT3G48675 48 / 4e-08 Protein of unknown function (DUF1278) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10004548 pacid=23159392 polypeptide=Lus10004548 locus=Lus10004548.g ID=Lus10004548.BGIv1.0 annot-version=v1.0 ATGGCGTCAACTTCCCACACCCTCGTAGCAGCTCCTTTCCTCATTCTCCTACTGCTGACGTGTCCCGCCACATCACGCCCCGTCATCAGCAGCAACATCC CTTCCGCCGCCGCCACATCATCACCAGCCCCACCACTCGCATCGAGGCTGAAACTGGACCAGTCGTCAGCCACGACCAACTGCTGGGAGTCGCTGATCGA GCTGCAGGCGTGCACTGGGGAGATCATACTCTTCTTCCTCAACGGGGAGACCTACTTGGGCCACGGATGCTGCAGCGCGGTACGTGTCATTGGGGAGCAC TGCTGGTCCAACTTGATCGAGACGCTTGGGTTCACCGGCGAAGAGAGCGACGTGCTTGAAGGGTACTGTGACCGAGCTGACAATGAAGATGACGAGGGTG GTGATGAGGGTCATGAGCATCACGCGCCGCCTCCTCCCGCAGGCGTGGCTCTGTCTCCGGCCGCCGTGCATGCTCCGAAGAAGGATAATTAG
AA sequence Show only first row Show all	>Lus10004548 pacid=23159392 polypeptide=Lus10004548 locus=Lus10004548.g ID=Lus10004548.BGIv1.0 annot-version=v1.0 MASTSHTLVAAPFLILLLLTCPATSRPVISSNIPSAAATSSPAPPLASRLKLDQSSATTNCWESLIELQACTGEIILFFLNGETYLGHGCCSAVRVIGEH CWSNLIETLGFTGEESDVLEGYCDRADNEDDEGGDEGHEHHAPPPPAGVALSPAAVHAPKKDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76750			Protein of unknown function (D...		Lus10004548 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10028553 [exp]	4.9	0.9256
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041658 [exp]	7.9	0.9480
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10040300 [exp]	12.0	0.8904
AT4G22060			F-box family protein with a do...		Lus10029350 [exp]	12.7	0.8647
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10008606 [exp]	13.3	0.8719
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	18.6	0.9237
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	22.8	0.9177
					Lus10012132 [exp]	23.7	0.8765
					Lus10020455 [exp]	26.8	0.9198
AT1G11050			Protein kinase superfamily pro...		Lus10028554 [exp]	33.8	0.8926

Compare expression of checked genes

Lus10004548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.