Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62310 173 / 2e-44 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 165 / 7e-42 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 165 / 1e-41 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT4G00990 144 / 3e-35 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 102 / 4e-22 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 98 / 1e-20 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015260 [exp] 296 / 2e-86 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 289 / 4e-83 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 283 / 8e-81 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 260 / 1e-74 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002052 [exp] 177 / 4e-51 AT1G62310 199 / 5e-60 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10004602 [exp] 166 / 3e-44 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 169 / 4e-43 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10002051 [exp] 134 / 2e-32 AT3G07610 172 / 1e-44 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020084 [exp] 122 / 3e-28 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091200 [exp] 209 / 1e-55 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G082901 [exp] 202 / 3e-53 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G006200 [exp] 167 / 3e-42 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 167 / 3e-42 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.015G012800 [exp] 161 / 4e-40 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G032700 [exp] 128 / 5e-30 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 124 / 8e-29 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.013G019000 [exp] 106 / 3e-23 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G027000 [exp] 104 / 1e-22 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10004549 pacid=23159381 polypeptide=Lus10004549 locus=Lus10004549.g ID=Lus10004549.BGIv1.0 annot-version=v1.0 ATGGCACTCCCGTGCGCCGCACGACGCCAATTGGCGGCGGCGCTGACCGAGTCAAAGCAAAAAAAGCGGCCGCTTGACGACCAGACGAAATCCCCGCGGT GTCCTTGTCCTCGTCCGAATAAACGAAAGATTGACAACGACGGAGGCGCGTCCGCGATGATCGCTAACCCAACGCTTCCGCCGGCCGCCGCTACACCGAG AAAGTCGTCGTCCCGGAATCTAATTCCGCCGCCGTTATCGGTGGTGCCGAAAGCAGAGGAAGTGGTCGTTGACGAGGATGAAGAGGAGGAGGAAGAGGAA ATTCGGGATTGTAATTGGGTCAGTGAATTTGCTAAAGAGTTGAGTAAGGGGATTCCGGTTATGGAGCTTTCGGTGGAGAAGCCGGCGGAGATGTTGCGTA ATCCGTCTTGGGAACGCAATTCGTTTCACTTGGAAGGCCTAGCAAGTGTCGAGGCAGTAAATGGGGAAAGTGCGCCATTGTTGGAGCGTGTTTCTGCAAC TGAAGAGGAGGTTGTGGAGCTGGAGTGCGTTGGAGCAAGTCTTACTGTTGAGGAGGAGATTGATGCTATAAAAATAGATGTAGACAGAAAGAAGAAGCCA ATGACTGAAGACAAAGCTTGTAGGAGTATCTGTGATCGAGTTGTGGAGGAGATGGTTGATGATGAAGATGAAGAAATGAAGGAAGATGCAATTGAGACGG TTTCTAGAAAGAAGGGAAGCAAGGCAGATAAGAATATTGACCGACCGAAGAGTTCTGAGCTATTCCAGAGAGTGCTTCGTAGCTTCGAAGCTCACAAACC AATTTGCAATGCGGAGTCCAACTGTACTGTCGAGAAGGAGGTTGTTTCAGCTAAGAGTAAACCAAGTAGCTATGATGAAGATAAAGAAACGAAGGAAGAT GCAATCGAGAAGCTTTCTACAAATAAGGGAAGGAAGGAAGCTAATATTATTGACCGACCAAAGAGTTCTGAGCTGTTCCAGAGAGTGCTTCGCAGCCCCA AAGCTCGCAAACCAAATTGCAATGCAGAGTCCAACTGTACTGTCAACGGGGAAGACTCTACTGAGAAGGATCTGCTACCACGGTTGCATCTTGAACTGGC TCACAATGAAAGCAGACGACATGCTGAATATATATTACAAGCGCTTTTACCTTTCTTGAAGCGAATAGACAAGGAACAATTAATGGAGAGAAAGACTGAT GCAGGAATCCTAGTTGAAGATTTAGGCGTGGAGGAAGCTGAACATCAGACAGATGTGCACATGCACTGGTACTATAGTATCGTTAATCTTAAAGAGTCTG AATATTCTCCAGTGCTGTATGCTGGCTACATGAAGAATGATAAAGTTTTCTCTATTTTCATTGAATGCAGTGTAATCTGCAAGACCTCTATCTTTGACTA CCACAGGAAATGTTTGGAATGTGACTCCGATATCTGCCTTTTCTGTTGCTCTGAGATCCGTGATGGTCATCTTCGGGGCAATATGCCAAATGTAGTTATG AAATATGTTGATAGGAGATTTGACTATTTACATGGTGCAACTGTCGAGTTTCAAAAAATTAGTCACCCTGTTGTTTCTGACCCGGAGATTATGCCGGATC TGCAACCCAAATCTGGTTGGAAAGCCAATGGAGATGGCGGCATTACTTGTGCTTGTGGTTCTGGCATTTTAAAACTCAGAACCCAGGTTAATAGTAGTTG GGTCTCAGAGTTGGTGAAGATAGCAGAAGATCTTGTTAAAGGACTTGACGTTGTTTCGGCTGCACCGTCCGCTAAAGAACCGCCAGGCCAATGTGATAAG TTAATGATGGCTTCATCTCCTGAACCTGCCATCGTTGGCAATGTGCTTGAAATTGGGGCTGGGTTCAGCTGGGAGCCTATGGTTATGTGGCGTGCCTTCT GCCAAGTTAAAAGTGAGAATTATGCTACGCTCCTTGATGTGAAGACGCTAGATTGTTTGGATTGGTGCGAGGAGAACTGGCACTGTGGAGGGAGGTGCTC TATGGGACATCTTCCGCAGAGTAGATGTCCCCAAACTGGAAGAATATTTCTGAAGCACTTCAAAGAATTTAGGCACATTCATTGTTCTCCTTTGCAAGAG GTCGTCCATCCTATTCATGATCAAACCTTTTACATGACAGAGGAACATAAAAGGAAACTGAAGAAAGAATATGGTATTGAACCGTGGACGTTCACCCAGA AACTCGGCGATGCAGTCTTTATTCCTGCTGGCTGTCCCTATCAAGTGAGAAACTTGAAGTCGTGCATCAATGTAGCTTCACACTTTGTGTCGCCTGAAAA CGCCGGAGAGTGCATTCGTTTAACGGAGGAATGCCGTCTTCTGCCACTGAACCATCCAGCGGAAGACAAGTTGCAGTCAGGTGATTCATGTGCTGGTGGT ATACGAATTTATCACATCCTCGACCCTCTCACCTTGGAGTTTATGATCATCCTCCTTGCTCTCCTTATAGCAGAATCTAACCTTCAGATCACCATCTCCA TCCTCTCCGATTGGTTCAAAGCTGTCCATCTCTTCAATAGCTCAACCGATGACATCCGCGACAACTTCTTCATGAGTGCTGATCCATTTTCTCATGATTC TCTTTTATTACTCCGTGACATGTCACTCGTACTGATAATTACGCAGCTTATTTAG
AA sequence Show only first row Show all	>Lus10004549 pacid=23159381 polypeptide=Lus10004549 locus=Lus10004549.g ID=Lus10004549.BGIv1.0 annot-version=v1.0 MALPCAARRQLAAALTESKQKKRPLDDQTKSPRCPCPRPNKRKIDNDGGASAMIANPTLPPAAATPRKSSSRNLIPPPLSVVPKAEEVVVDEDEEEEEEE IRDCNWVSEFAKELSKGIPVMELSVEKPAEMLRNPSWERNSFHLEGLASVEAVNGESAPLLERVSATEEEVVELECVGASLTVEEEIDAIKIDVDRKKKP MTEDKACRSICDRVVEEMVDDEDEEMKEDAIETVSRKKGSKADKNIDRPKSSELFQRVLRSFEAHKPICNAESNCTVEKEVVSAKSKPSSYDEDKETKED AIEKLSTNKGRKEANIIDRPKSSELFQRVLRSPKARKPNCNAESNCTVNGEDSTEKDLLPRLHLELAHNESRRHAEYILQALLPFLKRIDKEQLMERKTD AGILVEDLGVEEAEHQTDVHMHWYYSIVNLKESEYSPVLYAGYMKNDKVFSIFIECSVICKTSIFDYHRKCLECDSDICLFCCSEIRDGHLRGNMPNVVM KYVDRRFDYLHGATVEFQKISHPVVSDPEIMPDLQPKSGWKANGDGGITCACGSGILKLRTQVNSSWVSELVKIAEDLVKGLDVVSAAPSAKEPPGQCDK LMMASSPEPAIVGNVLEIGAGFSWEPMVMWRAFCQVKSENYATLLDVKTLDCLDWCEENWHCGGRCSMGHLPQSRCPQTGRIFLKHFKEFRHIHCSPLQE VVHPIHDQTFYMTEEHKRKLKKEYGIEPWTFTQKLGDAVFIPAGCPYQVRNLKSCINVASHFVSPENAGECIRLTEECRLLPLNHPAEDKLQSGDSCAGG IRIYHILDPLTLEFMIILLALLIAESNLQITISILSDWFKAVHLFNSSTDDIRDNFFMSADPFSHDSLLLLRDMSLVLIITQLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	0	1
AT3G02125			unknown protein		Lus10013196 [exp]	1.4	0.9473
					Lus10005955 [exp]	2.0	0.9338
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	2.8	0.8979
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	3.5	0.9145
					Lus10004431 [exp]	4.5	0.8709
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	4.6	0.8649
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Lus10019906 [exp]	5.7	0.8538
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	7.3	0.8669
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10018825 [exp]	8.8	0.8001
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	9.0	0.8519

Compare expression of checked genes

Lus10004549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.