Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58520 788 / 0 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 739 / 0 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 536 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 503 / 6e-169 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G54510 395 / 2e-127 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT4G02900 349 / 9e-109 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 344 / 4e-107 ERD (early-responsive to dehydration stress) family protein AT4G04340 336 / 5e-104 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G11960 327 / 1e-100 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 322 / 5e-99 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004597 [exp] 1414 / 0 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 1043 / 0 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10032801 [exp] 672 / 0 AT1G58520 483 / 7e-163 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10005223 [exp] 525 / 3e-177 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10030431 [exp] 498 / 5e-167 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10037139 [exp] 490 / 8e-164 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10043455 [exp] 379 / 7e-121 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10002133 [exp] 347 / 1e-107 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10035300 [exp] 341 / 6e-106 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113800 [exp] 899 / 0 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.004G115800 [exp] 556 / 0 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.008G091200 [exp] 519 / 4e-175 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.010G164100 [exp] 518 / 5e-175 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.003G200900 [exp] 415 / 6e-135 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.014G156100 [exp] 334 / 2e-103 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006100 [exp] 326 / 2e-100 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.002G226800 [exp] 326 / 2e-100 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009900 [exp] 321 / 3e-98 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 314 / 8e-96 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10004550 pacid=23159368 polypeptide=Lus10004550 locus=Lus10004550.g ID=Lus10004550.BGIv1.0 annot-version=v1.0 ATGGAATTCGCGGCACTTTTAACTTCAGCGGGAATCAACATAGCTCTGTTCGTGTTGCTTCTAACGCTATACTCGCTTCTCAGAAAGCAACCAAGCAACA GGATTGTGTATTTCGGCCGGATAGCCTCCTTGCAGTTGAGAAGAAGCAATGATGACCCTTTCACCTTGGACAGATTTGTGCCCTGTACTAGTTGGCTTGT TAAGGCTTGGAATACATCTCAAGAAGAGATCTTGGCTGTTGGGGGCTTGGATGCTGTTGTTTTCCAGAGATTGCTTGTCTTCAGTATTCGTATCTTCTCC ATTGCCAGTTTTGTTTGCGTGTTTCTAGTGATTCCAGTGAATTACTATGGCAAAGAGATGAAGCATAAGCCGCTCGGAGCTGAATCGTTGGATGTTTTCA CTATTGGCAATGTCCATGAAGGCTCAGGATGGCTTTGGGCTCATTGTGTTGCATTATACATAATATCTTGCTGGACTTGTGCCCTTCTTTACTATGAATG TAAAAGTATCACGGAGATGAGGTTGTCACACATAAAAGGGTCGCTTGCAAATCCTAGTTATTTTAGTGTGTTGGTTCGATCTATTCCGTGTGTTGAAGGA GAATCATACAGCGATACAGTCAAAAAGTTCTTTACAACTTACTATCCTTCAACCTACTTGGCTCACCAAATGGTACACCACGCCAGTGTTGTTCAGAAAT TGTTGGCTGAGGCAGATAGGATGTGCAAGATGCTCGCATCTGCTTCATCTAAAGAAGGAAGTTTAAGGGCATTTTGTTTTTGTTCATCGAATACACTGTC CTTTCGCATTCTTGACGACCAACCAGAAACCGAAAATGTTGAGGCGGGGCCCGCCAAATATCCTGATTTTGAAATTGCTCCACCAGATAATGAACGGCCG GTTGCTTTTGTCTTCTTCAAGACGCGATATGCTGCTGTTGTTGCCACGGAAATGCTCCAATCCGCAAATCCAATGTTGTGGGTGACAGAAGCAGCTCCGG AACCACTTGATGTTTTGTGGTCAAGCTTGTCTATCCCGTATAAGCAGCTTTGGCTCCGAAAGATAGCAACACTTCTGGCTGCAATAGTATTCATGTTTAT ATTCCTTATCCCCGTGACATTTGTTCAAGGCTTGACTCAACTGGAAACGTTATCAAAGACATTTCCTTTCCTAAGAGGGCTTTTGAAGAAGGCCTATATA AGTCGTGTGGTGACAGGTTACTTGCCGAGCGTAATCTTGATGCTATTCTTGCTTCTAGTGCCGCCAGTGATGATGCTGTTTTCGAGAATAGAGGCACCGA TATCTCGCAGTTTGAGACAAAAGAGTGCATGCTTGAAGATACTCTACTTCACCATCTGGAATGTTTTCTTTGTCAATGTTCTCTCGGGGTCAATTATTAG TCAACTCAATGTTTTCTCTTCTATAAGAGACATACCTCAGGAACTTGCAAGTGCTATACCCACTCAGGCTAGCTTCTTCATGACCTATGTTTTCACATCA GGCTGGGCAGGCTTGGCCTGTGAATTAATGCAAGTTTTCACTTTTATTTGCAACCTTTTCAAAAAGGTGATCCTCAGAAACAAGCAGGATACACAGTTTT GGCTCATGTCTTTCCCATACCATACGGAGATCCCAAGAGTTCTTTTATTTGCACTCATTGGGTTCACTTGTTCAATAATGGCACCTTTAATATTGCCATT TTTGTTGATTTACTTCTCCATGGCGTATCTCATATACAGAAATCAGATTCTCAACGTATATATTAAAAAGTACGACAGTGGGGGGAATTTTTGGCCTTTG ATCCACAATACAACGGTATTCTCATTGGTATTGACACAAATTATAGCTCTTGGTGTATTTGGAATCAAGGACTCTCCAGTTGCATCCGGTTTCACCATCC CTCTCATCATTTGCACACTTTTATACACTGCATATTGCAGGCAGCGGTTTCTGCCTGTTTTCCAGAAACAGGCATCTCAGATTCTGATAGACATGGATAG AGAAGACGAAAACAGCGACAGACTTGAAGAAATATACAACAAGCTACGTAACACATATTGCCAGATCCAATTATCTTCACGGGAAGTTCGACCTGTGTCA CGAGCACCGGATGTGCCCGTAACTACCTCCAGTCCAAAAGCTGCCAAACTAGCATCATTTGAAGACGAGGAGCTAGGAAAGTCGAGCACTGGAGTGTCTG CAATTATCAATGGAAAGCAAAGTCCTTTGAAGTGA
AA sequence Show only first row Show all	>Lus10004550 pacid=23159368 polypeptide=Lus10004550 locus=Lus10004550.g ID=Lus10004550.BGIv1.0 annot-version=v1.0 MEFAALLTSAGINIALFVLLLTLYSLLRKQPSNRIVYFGRIASLQLRRSNDDPFTLDRFVPCTSWLVKAWNTSQEEILAVGGLDAVVFQRLLVFSIRIFS IASFVCVFLVIPVNYYGKEMKHKPLGAESLDVFTIGNVHEGSGWLWAHCVALYIISCWTCALLYYECKSITEMRLSHIKGSLANPSYFSVLVRSIPCVEG ESYSDTVKKFFTTYYPSTYLAHQMVHHASVVQKLLAEADRMCKMLASASSKEGSLRAFCFCSSNTLSFRILDDQPETENVEAGPAKYPDFEIAPPDNERP VAFVFFKTRYAAVVATEMLQSANPMLWVTEAAPEPLDVLWSSLSIPYKQLWLRKIATLLAAIVFMFIFLIPVTFVQGLTQLETLSKTFPFLRGLLKKAYI SRVVTGYLPSVILMLFLLLVPPVMMLFSRIEAPISRSLRQKSACLKILYFTIWNVFFVNVLSGSIISQLNVFSSIRDIPQELASAIPTQASFFMTYVFTS GWAGLACELMQVFTFICNLFKKVILRNKQDTQFWLMSFPYHTEIPRVLLFALIGFTCSIMAPLILPFLLIYFSMAYLIYRNQILNVYIKKYDSGGNFWPL IHNTTVFSLVLTQIIALGVFGIKDSPVASGFTIPLIICTLLYTAYCRQRFLPVFQKQASQILIDMDREDENSDRLEEIYNKLRNTYCQIQLSSREVRPVS RAPDVPVTTSSPKAAKLASFEDEELGKSSTGVSAIINGKQSPLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	0	1
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	1.0	0.9277
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	1.4	0.8844
AT1G04200			unknown protein		Lus10039377 [exp]	7.3	0.8273
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	7.9	0.8346
AT1G04200			unknown protein		Lus10006619 [exp]	8.1	0.8421
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	8.5	0.8390
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10026510 [exp]	9.4	0.8258
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	10.2	0.8143
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	11.6	0.8374
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	11.7	0.8286

Compare expression of checked genes

Lus10004550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.