Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46410 259 / 3e-81 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 238 / 2e-73 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G11860 166 / 1e-47 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT1G29770 66 / 8e-12 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 66 / 9e-12 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 63 / 3e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004596 [exp] 775 / 0 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 453 / 5e-157 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10015787 [exp] 164 / 3e-45 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10037019 [exp] 129 / 1e-31 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10007321 [exp] 69 / 2e-12 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 68 / 3e-12 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10037018 [exp] 54 / 1e-07 AT5G11860 108 / 1e-27 SCP1-like small phosphatase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078300 [exp] 493 / 2e-172 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G353700 [exp] 481 / 9e-167 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 169 / 5e-47 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G054700 [exp] 159 / 2e-43 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.004G062900 [exp] 69 / 7e-13 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 64 / 3e-11 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 46 / 4e-05 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 44 / 0.0002 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G364500 [exp] 44 / 0.0002 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.010G188500 [exp] 43 / 0.0002 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10004551 pacid=23159374 polypeptide=Lus10004551 locus=Lus10004551.g ID=Lus10004551.BGIv1.0 annot-version=v1.0 ATGCCATCACTGAAAATGAAGACAAAACTAAATGGAGGCTCTTTAGGGGAAAGAAGTCTGGGTGTGTGTCAGACATCTAGTGTTATATCCAAAAAATCAT GCTCTAATGTCACGGTTTCTCCTTTACTAGAGGCTGATTTGTGTATTCCGAAAAGCCAAGACGATTGCACAGCTTTGTCAAGTGGGGAGATGCATGCACA GGAAACCAGCAACCCTGAAGTGCTTGATCATCAGCGACTGTCAAATCAAGGGAACTCCCATTTTCAGGCACATGATTCATCATACCGTGTAGATTCTGGA TCCACTGAGAGGATGGATGTTACAAACAACTGCACAGCTGACTTGGAAACAATTTTTTCACCTGCTTTGGAGCCCATTGGTATTTATAACATGCCCAGCA TAGATGAGAATCCAGGGAACATGAGTAATCTTAATATCCCAGGGTTTGGAACTGATGGAAGGGATGGTAATATAAGCTTATCTGATTATCAGAGCTGCAA CATATCGGATTTCTCAATCTCCCACATGATTATCTCTAGCATACCGTTTGACGGGAATGCAGTGAATAGTGACGTCAGTGAGACTGAATTTTTTCTTGAT TACCGATGTGCTGAGCCAAGTATGTTGTTTGATGTGGCTCAGGAGTACGTGATACTCCCTTTTCTCGAGGATACTGCGAAATTGACCAATTCCAATGATC TGAAATCAGGTGAAGAGGCTATTGGAGATTCAGGTGATGCTGGCTTATATCAAGCTATCAGCCAGATAAGAACTTGTAACCAGGAATGTGATCGTATCGT CGACTCTGATCCAGCTGATGATTTTGATCCACAGTTCTTTATCAGGAATCTCCCTGAACTATCGGAGGTCGTGTCTAATTTTCAGCCGAGTATGTTCCCA AAGGATTCTCAAAGGAGGAAATCAGTTACATTGGTTCTGGACTTGGATGGTGAGGAATTTCTTCAATTACTATGCCTGGAGTTTTATTTCGAATGCTCAT GCAGTTACGTAATGCCGGCTGAAACACTCGTTCATTCTACACTGGAGCCTTGTGAAGATGCCGACTTCACCTTTACTGTTTTCTTCAACATGAAAGAGCA TATCGTCTATGTGAAAAAGAGGCCTCACCTGGATGCATTCCTGGAGAGAGTCGCTGAGATGTTCGAGATTGTTATCTTCACAGCCAGTCAAAGCATATAT GCTGCACAGCTTTTGGACATATTGGATGCAGATAAGAAACTTATATCTCGTCGGGTTTATCGCGAGTCGTGCATATTTTCAGATGGAACTTACACCAAAG ACTTGACAGTCTTAGATGTGGATCATGCAAAAGTTGCCATAATTGACAATTCTCCACAGGCCATGTCAATCGGATGCATCATTCGTAATATACCAAAATC TCATGGTAAGTTGAGCCTGATCAAGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10004551 pacid=23159374 polypeptide=Lus10004551 locus=Lus10004551.g ID=Lus10004551.BGIv1.0 annot-version=v1.0 MPSLKMKTKLNGGSLGERSLGVCQTSSVISKKSCSNVTVSPLLEADLCIPKSQDDCTALSSGEMHAQETSNPEVLDHQRLSNQGNSHFQAHDSSYRVDSG STERMDVTNNCTADLETIFSPALEPIGIYNMPSIDENPGNMSNLNIPGFGTDGRDGNISLSDYQSCNISDFSISHMIISSIPFDGNAVNSDVSETEFFLD YRCAEPSMLFDVAQEYVILPFLEDTAKLTNSNDLKSGEEAIGDSGDAGLYQAISQIRTCNQECDRIVDSDPADDFDPQFFIRNLPELSEVVSNFQPSMFP KDSQRRKSVTLVLDLDGEEFLQLLCLEFYFECSCSYVMPAETLVHSTLEPCEDADFTFTVFFNMKEHIVYVKKRPHLDAFLERVAEMFEIVIFTASQSIY AAQLLDILDADKKLISRRVYRESCIFSDGTYTKDLTVLDVDHAKVAIIDNSPQAMSIGCIIRNIPKSHGKLSLIKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	0	1
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	1.0	0.9397
AT2G39950			unknown protein		Lus10028266 [exp]	2.8	0.9326
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	4.5	0.9301
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	4.6	0.9306
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	5.0	0.9290
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021544 [exp]	6.6	0.9067
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	7.2	0.9185
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	7.3	0.9274
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	7.7	0.9002
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	8.4	0.9177

Compare expression of checked genes

Lus10004551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.