Plant FIBer expression Database

Lus10004553 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35360 166 / 8e-52 ubiquitin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000895
[exp]
250 / 5e-85 AT2G35360 97 / 4e-25 ubiquitin family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G089400
[exp]
186 / 1e-59 AT2G35360 266 / 6e-91 ubiquitin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10260 SAYSvFN Uncharacterized conserved domain (SAYSvFN)
Representative CDS sequence
>Lus10004553 pacid=23159399 polypeptide=Lus10004553 locus=Lus10004553.g ID=Lus10004553.BGIv1.0 annot-version=v1.0
ATGAATTTTGGAGGAGATCCAAGAACAAATAGGTACTTCATTCATCCTCGGTTAGCCATGGTAGAGATTGTTGAAGGCGGCGGCGTCGTCAATCGCTATT
ACACGACCGGAGAAGACAACGATAGTGTAACGAAGAAGAAAGCAAAGGAAACAAATATGGTGGAGATCACTCTCAAAACAATTGGCCCTTCTCCCCCTTC
TCGCATCATTCTTCCTTCTTCCATCACGGTGCGTGACTTGAGAAAGTTTATTGCTGAAAAGAAACATCTACCAATTGAAAATGTGAGATTAGTCTTGCAT
GGGAAGATGTTGGAAGACTGTGGAGAAGATGATATGCTCATCAAGCTGAAAAATAATGATATCCTTTTAGCTGGACCTTTCTCACTCTCTGGGAAGCAGT
GGGCTGTTATTATTCTGTGGTTCATTTTGGCACCTGTTGCTAATAGATGGCATATTGGTCCTTTATATATACTTGGCACAGGCTTTGCAATCATCTTCCT
GAATCTGGGGAGAAGGCAGGCGGGAGAGCTGAGCGCTTATTCAATCTTCAATGAGGACTTCAGGGAACTTCCAGGCACCCTGAACGCAGATCGGGTGGAT
AGAGATATTCGAGCTGGTCAGATGTGA
AA sequence
>Lus10004553 pacid=23159399 polypeptide=Lus10004553 locus=Lus10004553.g ID=Lus10004553.BGIv1.0 annot-version=v1.0
MNFGGDPRTNRYFIHPRLAMVEIVEGGGVVNRYYTTGEDNDSVTKKKAKETNMVEITLKTIGPSPPSRIILPSSITVRDLRKFIAEKKHLPIENVRLVLH
GKMLEDCGEDDMLIKLKNNDILLAGPFSLSGKQWAVIILWFILAPVANRWHIGPLYILGTGFAIIFLNLGRRQAGELSAYSIFNEDFRELPGTLNADRVD
RDIRAGQM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35360 ubiquitin family protein (.1) Lus10004553
[exp]
0 1
AT4G14880 OLD3, CYTACS1, ... ONSET OF LEAF DEATH 3, O-acety... Lus10015947
[exp]
5.7 0.8945
AT5G25940 early nodulin-related (.1) Lus10002236
[exp]
8.1 0.8882
AT1G09850 XBCP3 xylem bark cysteine peptidase ... Lus10006130
[exp]
9.2 0.8665
AT4G34270 TIP41-like family protein (.1) Lus10020231
[exp]
10.6 0.8727
AT1G02360 Chitinase family protein (.1) Lus10038026
[exp]
12.6 0.8708
AT1G71840 transducin family protein / WD... Lus10031629
[exp]
13.0 0.8880
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Lus10033342
[exp]
13.1 0.8607
AT5G10940 ASG2 ALTERED SEED GERMINATION 2, tr... Lus10040538
[exp]
16.1 0.8736
AT3G57090 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide ... Lus10036023
[exp]
19.4 0.8922
AT5G46250 RNA-binding protein (.1.2.3) Lus10023315
[exp]
22.0 0.8730

Lus10004553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.