Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35350 503 / 8e-167 PLL1 poltergeist like 1 (.1) AT2G46920 361 / 1e-111 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT1G07630 351 / 5e-110 PLL5 pol-like 5 (.1) AT2G28890 349 / 2e-109 PLL4 poltergeist like 4 (.1) AT5G02400 347 / 3e-108 PLL2 pol-like 2 (.1) AT3G09400 328 / 1e-101 PLL3 pol-like 3 (.1.2) AT3G16560 204 / 2e-57 Protein phosphatase 2C family protein (.1) AT5G66080 154 / 2e-40 Protein phosphatase 2C family protein (.1) AT3G51370 149 / 6e-39 Protein phosphatase 2C family protein (.1.2) AT3G12620 148 / 1e-38 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000896 [exp] 1341 / 0 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10016555 [exp] 352 / 1e-109 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 346 / 1e-108 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 349 / 2e-108 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 345 / 6e-108 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10004793 [exp] 213 / 3e-60 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 211 / 2e-59 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10027825 [exp] 154 / 3e-40 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 150 / 3e-39 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089500 [exp] 1012 / 0 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 1005 / 0 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.002G185000 [exp] 507 / 6e-167 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.014G110500 [exp] 493 / 1e-161 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.009G030600 [exp] 372 / 4e-117 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.001G239300 [exp] 366 / 7e-115 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.006G085000 [exp] 339 / 5e-105 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.003G159600 [exp] 204 / 4e-57 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 197 / 2e-54 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 195 / 7e-54 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10004554 pacid=23159373 polypeptide=Lus10004554 locus=Lus10004554.g ID=Lus10004554.BGIv1.0 annot-version=v1.0 ATGGGAAGTGGTCTCTCCTCCCTCTTCCCTTGTCTTAAACCGCCGGCCGGTAACCACCACGACAAACACCAGCAGCCGGACCTCATCTTCACCCCCTCCG ACCCATTGGACGAAACCCTAGGCCACTCCTTTGTCTACGTTCGATCTTCCAACCGTTTCCTCTCACCTACTCATTCCGATCGCTTCGTCTCTCCTTCTAG CTCCCTACGCTTCTCCCCAACCCGATCCGAATCTGCCAGGCCACCCGAGCCAACAACCGCTACCGCTTTTACGACCATTTCCGGCGCCTCCCTCAGCGCC AACAACTCCACTCCTAGGACTGCCTCCACTCCCAGGACTGTGGTCCAGCTCGACAGTATTTACGACGATGCCACTGATCCCGCCGCTGCAGCTGGAGGAC TCAAGTGCAGCAGCAGCACTACTAGCGGCATCTTCCATGCCCATGGCTTCGAGAGCACAGCGTCCTTCTGCGCCTTGCCTCTGCAGCCAGTGCCACGTGG AGGCGAGGGCTTCTTCCTCTCCGGTCCAATCGAACGCGGGGCATTGTCCGGCCCGCTCGATGCCAACTCCACCGTCGCGGGAGAGAGCGCCGGCGGGATT CACTTCTCGGCTCCGCTCGGCGGCTTGTATGCGAAAAAGAGGAGGAGGAGAGGGATCATGCGGTTTAAGAAGGCAATATACCGCAACCTGTCGGAAAAGA AGCTGCCTTGGGTAGTTCCCGTGTTTAATTTTGGAAAACCCAGAGACCATTCTACAGGTGGGGAGAATTCTACAGGTGGGGAGGAAAGCGAAAGCAAATA CGAGAACAACGTGCAATGGGCTCTAGGGAAGGCTGGAGAGGACCGGGTGCATGTGGTTGTATCAGAGGAGCAAGGATGGTTGTTTGTCGGGATTTACGAT GGGTTTAACGGCCCTGATGCTCCTGAATTCTTGATGGGGAATCTGTATAGGGCTGTGTATCACGAGCTTCAAGGATTGTTTTGGGATGTCGAAGAGTCTG GAGAGATGACTAATCTAGAGCAGAGTGAAGGTAGAACCGACGGATCGAGGGATGATGCTGGTAAGAATCGTTGCGGGAGTCTTAATGGTAGTTCTGAATC TAGCGTAGTAGTACCTCAGGGTCAAGACACTGTTGCTCGAGCTAACTCATTTTCAGGAATCCGTGGTGAACCTAACCGTGATATTTTAGATTGTGAAATT GGATCAAGCAATGCGGCTCGAACTTTCATATCAAAGGAAATATGCATTGAAAGAGAAAGTGATGGTTTGAATGGTGGAAGTGAACAGGTCATGGTGCACC AAGATAGAATAAAACGAGTTACATTTCAATCAGATGGAATCGAGATTCCTCAAAGGAGGCGGTTATGGGAGTTACTTGCCAATGAGGACCTTGAGGATGG AGTTGATCTCTCTGGGTCAGAAAGATTTGCCTTTTCTGTGGATGATGCTATTAGTGTAGGGAATGCAGGGTCGGCAGCAAGTAGAAGGTGGTTACTACTG TCGAAATTGAAGCAAGGGTTCTCAAAGCATAGAGAAAGGAAGTCTTTTCCTTGGAAATTTGGATTGGAGGGCAAGGAGGAGAAAGTAGAAGTGGAGATAG CTAGAATGGAAGAGGATAGGGTTGTGAAGAGGATGCGGAAAGATGGGCCAGTAGACCATGACTTGGTTTTGGGAGCATTGTCTCGTGCATTAGATGCGAC GGAGGTTGCATACTTGGAAATGACAGACAAGGTGCTAGGTACAAATCCGGAGTTGGCATTGATGGGCTCGTGTTTATTGGTTGTTCTAATGAGGGATGAG GACGTATATGTAATGAATGTGGGTGATAGTAGGGCGATTGTGGCTCAGAATGAGCCTCAAGAGGTTGCTTCTAGTGCCATCAATGATGGTCCAATCACAG AGGGGATTGTTGAAGGTCCTGATCAGGCAATGAGCTTGACTGCGTTGCAGTTGTCCACCGACCACAGCACAAGTGTTGAAGAGGAAATACTAAGGATAAA GAATGAACATCCAGATGACAGCCAATGCATTGTCAACGATAGAGTGAAAGGTCGCCTTAAGGTCACCAGAGCATTTGGAGCCGGATTTCTAAAACAGCCG AAGTTGAATGCTCCATTGTTGGAAATGTTTCGGAATGACTATATAGGCACTGCACCTTACATATCCTGCATCCCTTCACTTTGTCATCATCATCTCTTTC CAAGAGATCAATTCTTAGTCCTATCTTCAGATGGCCTATATCAGTATCTCACAAATCAAGAAGTGGTTTCTTTGGTCGAAAATTTCATGGAGAAGTATCC AGACGGAGACCCTGCACAGAGTTTGATAGAGGAACTTCTTTCTCGTGCAGCCAAGAAAGCAGGGATGGATTTTCATGAGTTACTGGACATCCCACAAGGA GATCGTCGAAAATACCACGACGATGTTACAGTGATGGTTATCTCGCTAGAAGGACGAATTTGGAAATCATCAGGAAAATACCTCTAA
AA sequence Show only first row Show all	>Lus10004554 pacid=23159373 polypeptide=Lus10004554 locus=Lus10004554.g ID=Lus10004554.BGIv1.0 annot-version=v1.0 MGSGLSSLFPCLKPPAGNHHDKHQQPDLIFTPSDPLDETLGHSFVYVRSSNRFLSPTHSDRFVSPSSSLRFSPTRSESARPPEPTTATAFTTISGASLSA NNSTPRTASTPRTVVQLDSIYDDATDPAAAAGGLKCSSSTTSGIFHAHGFESTASFCALPLQPVPRGGEGFFLSGPIERGALSGPLDANSTVAGESAGGI HFSAPLGGLYAKKRRRRGIMRFKKAIYRNLSEKKLPWVVPVFNFGKPRDHSTGGENSTGGEESESKYENNVQWALGKAGEDRVHVVVSEEQGWLFVGIYD GFNGPDAPEFLMGNLYRAVYHELQGLFWDVEESGEMTNLEQSEGRTDGSRDDAGKNRCGSLNGSSESSVVVPQGQDTVARANSFSGIRGEPNRDILDCEI GSSNAARTFISKEICIERESDGLNGGSEQVMVHQDRIKRVTFQSDGIEIPQRRRLWELLANEDLEDGVDLSGSERFAFSVDDAISVGNAGSAASRRWLLL SKLKQGFSKHRERKSFPWKFGLEGKEEKVEVEIARMEEDRVVKRMRKDGPVDHDLVLGALSRALDATEVAYLEMTDKVLGTNPELALMGSCLLVVLMRDE DVYVMNVGDSRAIVAQNEPQEVASSAINDGPITEGIVEGPDQAMSLTALQLSTDHSTSVEEEILRIKNEHPDDSQCIVNDRVKGRLKVTRAFGAGFLKQP KLNAPLLEMFRNDYIGTAPYISCIPSLCHHHLFPRDQFLVLSSDGLYQYLTNQEVVSLVENFMEKYPDGDPAQSLIEELLSRAAKKAGMDFHELLDIPQG DRRKYHDDVTVMVISLEGRIWKSSGKYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	0	1
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10000896 [exp]	1.4	0.9486
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	4.6	0.9367
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	5.2	0.9505
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10011839 [exp]	7.7	0.9316
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	8.8	0.9315
AT5G41760			Nucleotide-sugar transporter f...		Lus10037204 [exp]	9.4	0.9165
AT2G45290			Transketolase (.1)		Lus10004750 [exp]	13.0	0.9359
AT5G54970			unknown protein		Lus10032643 [exp]	13.9	0.9303
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	16.4	0.9297
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	18.6	0.9337

Compare expression of checked genes

Lus10004554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.