Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46580 955 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16390 450 / 1e-148 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT1G18900 188 / 7e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 180 / 4e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39980 163 / 4e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31400 154 / 8e-39 GUN1 genomes uncoupled 1 (.1) AT5G02860 152 / 5e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 149 / 4e-37 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G18940 143 / 3e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06580 139 / 9e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000897 [exp] 1387 / 0 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039071 [exp] 422 / 5e-138 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038788 [exp] 417 / 4e-136 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033110 [exp] 169 / 2e-43 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10013894 [exp] 158 / 9e-40 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 155 / 3e-39 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033127 [exp] 154 / 9e-39 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10034342 [exp] 148 / 3e-37 AT5G39980 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041429 [exp] 148 / 6e-37 AT5G39980 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089600 [exp] 999 / 0 AT5G46580 986 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G006800 [exp] 467 / 3e-155 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G019000 [exp] 464 / 4e-154 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G018600 [exp] 404 / 2e-131 AT4G16390 818 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G066400 [exp] 169 / 2e-43 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.017G075700 [exp] 158 / 2e-40 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G193900 [exp] 158 / 5e-40 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.014G118500 [exp] 153 / 2e-38 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.006G166200 [exp] 146 / 4e-36 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 143 / 1e-35 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004555 pacid=23159408 polypeptide=Lus10004555 locus=Lus10004555.g ID=Lus10004555.BGIv1.0 annot-version=v1.0 ATGGCTGCCACTCTATCAGCTGCTGCAGCCATGGACGTTCACTTCACCACTCACCAATCCGACGCCAGCCGAACATTCTTCTTCTCTTCTGCTTCTTCCT CGAAGAAGAAGAACTCCCGCCTCCCTTTCCCTTTTACCCGAAATGGTAAATTCCTCTTCCGCCGCCCAATTTCCATCACTGCCTCCGCCACTGAATCTGC CCCTAATGATTCGAAGAACCAATCACTATCCGAGCAGCTCAAGCCCCTGTCCACCGCCACTCTCTCCGCCGGCCCCGACCACCGCGAAGCCCAGCTCACA ACCACAAGGCCAAAATCCGTTTGGGTAAATCCGGCAAAACCAAGAAGGTCGGTTCTCTCCCTTCACCGCCATAAGAGGTCCCCTTACCAGCACAATCCAA AAGTGGAAGAATTGAGGCTTTTCGCTCGGAAGCTGAGCGATTGTGAAGTCAGTGAAGCTGCGTTCGCCTCTGCTATTGAGAATCTACCTCACCCTCCTAC TAGAGATAATTGTCTTTTGATTCTCAATAGCTTGAAGTCGTGGGAACTAAGCTACATGTTTTTTGATTGGATAAAGAAAGAGAAGTTATTCCCCTTGGAA ACTATCTTCTACAATGTGGTGTTCAAGTCCTTGAGGTTTGGGAAGCAGTTTGGAGTGATGGAGGATCTTGCTAATGAGATGGTAAGCAACGGGATTGCTC TTGATAACATTACTTATTCCACCATTATAAGTTGTGCCAAGAGGTGCAATAGTTATGATAAGGCTTTGGAGTGGTTTGAGAGGATGTATAAGACTGGGTT GATGCCTGATGAAGTTACTTACTCTGCTGTTCTTGACGTTTACGCTAAGTTGGGTAAGGTTGAAGAGGTTTTGAGCTTGTATGAGAGAGGGGTAGCTAGC GGCTGGAAACCGGACCCCATTGCATTCTCTGTAATGGCTAAGATGTTTGGGGAAGCTGGGGATTACGATGGCATAAGATATGTTCTTCAAGAGATGAAAA CATTAGGCGTGCAGCCTAATATGGTTGTGTACAATAACTTGTTAGAGGCAATGGGGAAGGCCGGGAAGCCCGGATTGGCTCGTAGTTTGTTTGAGGAGAT GATGGATTCAGGGCTAACTCCGAATGAGAAGACATTGACTGCTTTGATAAAGATTTATGGTAAGGCTAGGTGGGGTAAAGATGCAATGGAGTTGTGGGAA AGAATGAGGTCTAAGAAATGGCCGATGGACTTCATTTTGTATAATACTTTGCTGAATATGTGTGCTGATCTTGGGCTGGTGGATGATGCTGAGAAGCTGT TTGAGGATATGAAAAAATCAGAGAACTGCAGGCCTGATAGTTGGACTTATACAGCAATGCTTAACATCTATGGTAGTGGAGGGAATGCTTCTAAAGCCAT GGAGTTGTTTGAAGTGATGTCGGATTCGGGTGTTAAACTTAATGTGATGGGGTGCACTTGTTTGATTCAGTGCTTGGGTAAGGCTAGAAAGATGGATGAG CTGGTTAAAGTTTTTGATGCTTCGATTGCGCAAGGGATTAAGCCGGATGACCGGTTATGTGGGTGCTTGCTGTCTGTTGTGGCATTGTGTGAGAGCGATG AGGACGCAGTTAAGGTCGTTGGTTGTTTGCGGAAATGCAACCGCCCGAAGTTGGTTCGCCTCTTGAAAATGGTTATGGAGGATGAGACGGCGATTAGCTT CGAAGTTGTTAAGGAAGAGTTCAAAACAGTGATGAGCAGCACAGAGACAGAGTCACGGAGACCGTTCTGCAATTGTTTGATCGATATATGTCGTAGCAAG GAGCTCCAAACAAGAGCTCATGAGCTGCTCTATCTAGGAACACTGTTTGGGCTGTACCCGGATCTGCACAATGTAACCAGGGAGGAATGGAGTCTTGATG TTCGATCACTCTCCATCGGTGCAGCCTATACTGCACTGGAGGAGTGGATGGGGACGCTCGGGAAATTTGTGGAGAAGGAGGAGCTGCCTGAACTATTTGC AGCTCACACGGGAGCAGGAACGCACAAGTTTGCACAAGGGATGGCTAACTCATTTGCAGCTCATGTGGAGAAGATGGGTGCACCCTTCAGGCAATGTGAA GAGAGAGCTGGTTGTTTTGTGGCTAGCCGAGAGGACTTGGTCACTTGGTTGGAGTCGAGGAAGTCTTCTGCCACAGCAACAGCAGCTTAA
AA sequence Show only first row Show all	>Lus10004555 pacid=23159408 polypeptide=Lus10004555 locus=Lus10004555.g ID=Lus10004555.BGIv1.0 annot-version=v1.0 MAATLSAAAAMDVHFTTHQSDASRTFFFSSASSSKKKNSRLPFPFTRNGKFLFRRPISITASATESAPNDSKNQSLSEQLKPLSTATLSAGPDHREAQLT TTRPKSVWVNPAKPRRSVLSLHRHKRSPYQHNPKVEELRLFARKLSDCEVSEAAFASAIENLPHPPTRDNCLLILNSLKSWELSYMFFDWIKKEKLFPLE TIFYNVVFKSLRFGKQFGVMEDLANEMVSNGIALDNITYSTIISCAKRCNSYDKALEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLSLYERGVAS GWKPDPIAFSVMAKMFGEAGDYDGIRYVLQEMKTLGVQPNMVVYNNLLEAMGKAGKPGLARSLFEEMMDSGLTPNEKTLTALIKIYGKARWGKDAMELWE RMRSKKWPMDFILYNTLLNMCADLGLVDDAEKLFEDMKKSENCRPDSWTYTAMLNIYGSGGNASKAMELFEVMSDSGVKLNVMGCTCLIQCLGKARKMDE LVKVFDASIAQGIKPDDRLCGCLLSVVALCESDEDAVKVVGCLRKCNRPKLVRLLKMVMEDETAISFEVVKEEFKTVMSSTETESRRPFCNCLIDICRSK ELQTRAHELLYLGTLFGLYPDLHNVTREEWSLDVRSLSIGAAYTALEEWMGTLGKFVEKEELPELFAAHTGAGTHKFAQGMANSFAAHVEKMGAPFRQCE ERAGCFVASREDLVTWLESRKSSATATAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10004555 [exp]	0	1
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	2.0	0.9350
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	2.4	0.9405
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10043342 [exp]	4.2	0.9336
AT5G52960			unknown protein		Lus10039319 [exp]	7.3	0.9142
AT3G15810			Protein of unknown function (D...		Lus10016666 [exp]	8.5	0.8908
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	9.2	0.9176
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10000897 [exp]	9.5	0.9169
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	9.9	0.9112
AT4G17560			Ribosomal protein L19 family p...		Lus10014467 [exp]	10.1	0.9157
AT4G13220			unknown protein		Lus10011887 [exp]	11.8	0.9033

Compare expression of checked genes

Lus10004555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.