Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17970 632 / 0 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 595 / 0 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 573 / 0 Aluminium activated malate transporter family protein (.1) AT1G08440 290 / 5e-92 Aluminium activated malate transporter family protein (.1) AT4G00910 280 / 6e-88 Aluminium activated malate transporter family protein (.1) AT3G18440 282 / 7e-88 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G08430 267 / 3e-83 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT1G18420 265 / 3e-81 Aluminium activated malate transporter family protein (.1) AT2G17470 252 / 7e-77 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G68600 248 / 2e-75 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000898 [exp] 903 / 0 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 748 / 0 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10021272 [exp] 289 / 1e-91 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 288 / 2e-91 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 263 / 2e-81 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 260 / 6e-81 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 239 / 4e-73 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10027657 [exp] 243 / 6e-73 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 240 / 4e-72 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144300 [exp] 673 / 0 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.003G145000 [exp] 310 / 9e-100 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 309 / 2e-99 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 302 / 7e-97 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G085900 [exp] 302 / 9e-97 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 301 / 2e-96 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 293 / 2e-93 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 286 / 9e-91 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 286 / 1e-90 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 284 / 5e-90 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10004556 pacid=23159383 polypeptide=Lus10004556 locus=Lus10004556.g ID=Lus10004556.BGIv1.0 annot-version=v1.0 ATGGAGATGGCCTGGTGGTGGTGGTGTAAGAAGAAGGCAGGGATGGCGTGGGAGAAGACCAAGAGAGCTCCAGGTTTGGCCTTCCGGAGAATGTGGAAAC TTGGTAGAGACGACCCTCGCAGAGCTATTCACGCTGTCAAAGTTGGAATTGCACTCACCCTCGTCTCTTCGCTATACCTTCTGGAGCCACTCTTTGAAGG AATCGGCCAGAATGCCATTTGGGCCGTCATGACTGTCGTCGTTGTCCTCGAGTTCACTGCTGGTGCGACGCTATGCAAAGGGCTGAACAGAGGGCTAGGG ACAATACTAGCAGGTTCCCTCGCCTTTTTCATCGAATTCATTGCTGAGGAGACTGGACATCTCTACCGTGCCATTTTCATCGCCATTTCTGTCTTCGTTA TTGGGGTTTTGGCTACATACCTGAGGTTCTTCCCTTACGTGAAGAAGAACTACGACTACGGAGTGGTAATATTCCTCCTCACATTCAACCTCATCACTGT TTCAAGCTTCAGAATCAGCAACGTTTTGAAGATTGCACATGAACGCTTCATCACCATTGCCATCGGATGCGCCATCTGCCTCTTCATGTCCCTCCTTGTT TTCCCCATCTGGTCTAGCCAGGACTTACACAACTCCACAGTCAATAAGCTTCATGGCCTTGCCAATTCCATTGAAGCTTGCGTCAATGAATACTTTGAAG CTTCAGCTGATGAGAAGCAAGAAGAGCGGGATGATGATGATGATGAGAGTAAGGGTGAGGACCCGATCTACGAAGGGTACAAGGCAGTTTTGGACTCGAA ATCGGCTGATGAGACCTTGGCACTATACGCAAGCTGGGAGCCGAGGCATTCGAGGCAGTGTAGATACCCATGGCAGCAGTATGTCCAAGTTGGAGCTGCC CTTCGCCGCTTCAGCTACACTGTTGTAGCCCTCCATGGCTGTTTGCAAACAGAAATCCAGACTCCTAAATCATGCAGAGCTCTGTTCAAGGACCCTTGTG TTAGGTTAGCAAGTGAAGTTGCTAAAGTGCTCAAGGAGTTGGCCACCAGCATTGACAACAGGACACACTGTTCGCCTGAGATACTGTCGGATCACCTTCA GAAAGCGTTGCGGGACTTGAAAAATGCAATAAAGTCACAACCGAGGCTCTTCCTTGGCTCCAACACTAACCAAGCCACCAACATTCTAGCTATGGCTGCT GCCCAAGCTCGTCAGCAGAAGAACAATAATAATGCCTCATTATCATCTGTTAAGACGGATACATCAGCATTGATTGGATGGAAGAAGGATCACCACCACC ATCATCAAGCGACAGAGAGGAAGGTGTTGAGGCCGCAGCTGAGCAAGATTGCTATGATGACATGCAGCCTTGAGTTCTGCGAGGCGCTTCCTTTTGCAGC ATTTGCTTCTCTGCTCGTGGAGACCGTGGCTAGGCTTGATAATGTAATGGGGCAAGTTGAGGAGCTTGCCAGAGTTGCTTGCTTCAAGGAGTACGTTAAA CCTGATGTTAATGATGATGATGTTGTGGTGACTGTAAAATCTGAAACTTCTAAAGTGATTGTTGCTCATACTAACTTGCCTTCTCACGGCTCTGATTGA
AA sequence Show only first row Show all	>Lus10004556 pacid=23159383 polypeptide=Lus10004556 locus=Lus10004556.g ID=Lus10004556.BGIv1.0 annot-version=v1.0 MEMAWWWWCKKKAGMAWEKTKRAPGLAFRRMWKLGRDDPRRAIHAVKVGIALTLVSSLYLLEPLFEGIGQNAIWAVMTVVVVLEFTAGATLCKGLNRGLG TILAGSLAFFIEFIAEETGHLYRAIFIAISVFVIGVLATYLRFFPYVKKNYDYGVVIFLLTFNLITVSSFRISNVLKIAHERFITIAIGCAICLFMSLLV FPIWSSQDLHNSTVNKLHGLANSIEACVNEYFEASADEKQEERDDDDDESKGEDPIYEGYKAVLDSKSADETLALYASWEPRHSRQCRYPWQQYVQVGAA LRRFSYTVVALHGCLQTEIQTPKSCRALFKDPCVRLASEVAKVLKELATSIDNRTHCSPEILSDHLQKALRDLKNAIKSQPRLFLGSNTNQATNILAMAA AQARQQKNNNNASLSSVKTDTSALIGWKKDHHHHHQATERKVLRPQLSKIAMMTCSLEFCEALPFAAFASLLVETVARLDNVMGQVEELARVACFKEYVK PDVNDDDVVVTVKSETSKVIVAHTNLPSHGSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	0	1
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	1.0	0.9985
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011817 [exp]	1.4	0.9983
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10038075 [exp]	16.6	0.9879
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008639 [exp]	17.3	0.9983
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	19.6	0.9913
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009469 [exp]	20.0	0.9983
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	20.0	0.9972
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	20.1	0.9887
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10026288 [exp]	21.7	0.9773
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	22.4	0.9983

Compare expression of checked genes

Lus10004556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.