Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35330 426 / 8e-144 RING/U-box superfamily protein (.1.2) AT1G32530 348 / 1e-113 RING/U-box superfamily protein (.1) AT4G03000 184 / 3e-51 RING/U-box superfamily protein (.1.2) AT1G03365 182 / 1e-50 RING/U-box superfamily protein (.1) AT1G73950 54 / 1e-07 Transmembrane Fragile-X-F-associated protein (.1) AT1G18470 52 / 3e-07 Transmembrane Fragile-X-F-associated protein (.1.2) AT1G68820 49 / 3e-06 Transmembrane Fragile-X-F-associated protein (.1) AT1G63900 47 / 2e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT3G12920 45 / 6e-05 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT3G06140 44 / 0.0001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000899 [exp] 730 / 0 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10041246 [exp] 258 / 9e-78 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 254 / 4e-76 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10041245 [exp] 244 / 1e-72 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 241 / 3e-71 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 92 / 6e-20 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10042969 [exp] 56 / 5e-08 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10032471 [exp] 55 / 5e-08 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10021710 [exp] 48 / 1e-05 AT1G18470 687 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090000 [exp] 525 / 0 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 490 / 5e-169 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 270 / 3e-82 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.010G027900 [exp] 262 / 2e-79 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.012G119200 [exp] 52 / 3e-07 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.015G050300 [exp] 52 / 4e-07 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.008G116400 [exp] 52 / 6e-07 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.012G060100 [exp] 49 / 4e-06 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.015G118000 [exp] 48 / 8e-06 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.014G138000 [exp] 45 / 5e-05 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004557 pacid=23159411 polypeptide=Lus10004557 locus=Lus10004557.g ID=Lus10004557.BGIv1.0 annot-version=v1.0 ATGCGACATCAGTTTCAGGCCTCTACTAGTGGTAACCCAAGTGTGCAAATGGCTCCAGCTGCAGTTGAAGTGGGTGAGGAATCACAGATTTTGGGAAACC AAGATGAAGTCAGCTCAGTGTTGAACAAGTTTCGTGATTTAAATCTCGACGAAAATTTGGAGTCTCCAACCGATGAACAGAAGGATGATATGATAGTGAC TCTGTTTCATCAAATTCAGGACCTTGAGAAGCAAGTGAAGGAGCGGAAGGAATGGTCACAACAGAAGGCGATGCAAGCTGCAAGAAAGCTGACTAATGAT CTCACGGAGCTTAAAGTATTGAGGATGGAAAAGGAGGAGAACCAGCGATTGAAGAAAGGGAAACAAACACTCGAGGACTCGACAATGAAGCGACTTTCAG AGATGGAGAATGCTTTAAGGAAGGCCAGTGGTCAAGTCGACAGGGCTAATGCTGCTGTGAGAAGGCTTGAGACTGAGAATGCAGAAATCAGAGCAGAGAT GGAAGCCTCCAAGTTAAATGCAGCTGAGTCTGTAACAACCTGTTTAGAAGCTGCAAAGAGAGAGAAGAAGTGTCTGAAGAGGCTTTTGGCCTGGGAGAAA AATAAAGCAAAGTTGCAGGACGAGATTTCTGACGAGAAAGAGAAGATCAAGGAGTTGCAACGCTGTCTGAGTTTGGTTGAACAGGCCCAGAGAGATGCTG AGGCGAAGTGGCGTCAGGCATTGAAGGGGAAAGAGCAAATTTTGGCGCAGGTAGAAGAAGAAAGACTAGCCAAGGAAGCTGCAGAGGCAAACAATAAAAG GAAGCTTGAGGCTTTGCGGCTGAAGATAGAGATAGACTTCCAGCGGCACAAGGATGACGTTCAAAGACTGGAGCAGGAGCTCTCCCGTCTGAAGTCGTCA GTAGAATCCAACGAGTCGAACGATCAATTGCACAACAACAATCCACCTCAAGGAGGAGGAAAGGCCGAGAAGAGGAGAAGTCAGGGACGAACGATCGTGA AGATGCTTCATAATTTGGAGAAACTGGAGGATTCTTCGGAGAAAAGAGGCAACCATGACAGAGAATGCGTAATCTGCATGAAAGAGGAGGTCTCAGTGTT GTTCCTTCCGTGTGCACACAAAGTGATGTGTGCAATGTGCAATGACAACTATGGGAAGAAGGGGAAAGCTACTTGTCCGTGCTGCCGTGTCCCGATTGAG GAGAGAATTCATGTGTTTGGAGCAAGTTCGTAG
AA sequence Show only first row Show all	>Lus10004557 pacid=23159411 polypeptide=Lus10004557 locus=Lus10004557.g ID=Lus10004557.BGIv1.0 annot-version=v1.0 MRHQFQASTSGNPSVQMAPAAVEVGEESQILGNQDEVSSVLNKFRDLNLDENLESPTDEQKDDMIVTLFHQIQDLEKQVKERKEWSQQKAMQAARKLTND LTELKVLRMEKEENQRLKKGKQTLEDSTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLNAAESVTTCLEAAKREKKCLKRLLAWEK NKAKLQDEISDEKEKIKELQRCLSLVEQAQRDAEAKWRQALKGKEQILAQVEEERLAKEAAEANNKRKLEALRLKIEIDFQRHKDDVQRLEQELSRLKSS VESNESNDQLHNNNPPQGGGKAEKRRSQGRTIVKMLHNLEKLEDSSEKRGNHDRECVICMKEEVSVLFLPCAHKVMCAMCNDNYGKKGKATCPCCRVPIE ERIHVFGASS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35330			RING/U-box superfamily protein...		Lus10004557 [exp]	0	1
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	2.4	0.9128
AT4G25030			unknown protein		Lus10041414 [exp]	4.5	0.8948
AT1G27000			Protein of unknown function (D...		Lus10037210 [exp]	8.9	0.8640
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	10.1	0.8890
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10007031 [exp]	12.8	0.8696
AT3G11810			unknown protein		Lus10037134 [exp]	13.1	0.8857
					Lus10008052 [exp]	15.2	0.8762
AT1G25682			Family of unknown function (DU...		Lus10034268 [exp]	20.1	0.8593
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	23.4	0.8639
AT3G03330			NAD(P)-binding Rossmann-fold s...		Lus10026851 [exp]	24.5	0.8592

Compare expression of checked genes

Lus10004557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.