Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35470 70 / 8e-14 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 68 / 3e-13 PIRL5 plant intracellular ras group-related LRR 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000900 [exp] 238 / 2e-76 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 74 / 4e-15 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035976 [exp] 71 / 5e-14 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090100 [exp] 184 / 1e-55 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.001G144100 [exp] 179 / 2e-53 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.007G065000 [exp] 72 / 1e-14 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 71 / 2e-14 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004558 pacid=23159390 polypeptide=Lus10004558 locus=Lus10004558.g ID=Lus10004558.BGIv1.0 annot-version=v1.0 ATGTCCGTGAAGTCAACTGATGGCGGCCCCTCTCCGTCGGCTTCCTTGGTGGACACCGTCGGCGAAATCATGTCTCTGTATAGATCCCTCCCGCCGAGGC CTTCCATCGACGAAGTAGAGGCCGCCGTCTCCGTTGTGAAGTCTGTTAAGGCCGAGGAGCAGTCCAAGCTCGAAGAAATGTCCACTCACCGATGCCCACC GGAGGTCCCCGAGGAGCTCTTCGCGCTCCTGCAGCAGGTAAGGAAGACCGTGTCCGTTTTCCAGAGTCACGAGCAGAGCAGGGAGGCGCTTCACTTGGTT GAGCTCGATGAGATGTTCGAGTCGCTTGATGGACTGATCCAGCGAGTTTCACTGCTAGTCTCCGGGGATGCCGGGAAGGAGGAATCGGCTGGGGTAGAAG AGCCGGTTCTTATAATTGGAAAAGTGACCACCGGTCTTATTAGGAAGGAAGATGGAGACTTGCGTACGGATGAAATGGCCGGTCTGGGAAGGAGTTCTTC CAGTAAGGCTACCTTCCTCTCAGGTGAAGTTAAGTCTGATGAGAAACTAAGTCTGCTTAAGGTTGCAGCAGTTATAGAGAACTCTGCTAAATCTGGAGCT GATGAACCTGCCAGACTCGTTCGGGGAGTTGACGAGTCTAACTGA
AA sequence Show only first row Show all	>Lus10004558 pacid=23159390 polypeptide=Lus10004558 locus=Lus10004558.g ID=Lus10004558.BGIv1.0 annot-version=v1.0 MSVKSTDGGPSPSASLVDTVGEIMSLYRSLPPRPSIDEVEAAVSVVKSVKAEEQSKLEEMSTHRCPPEVPEELFALLQQVRKTVSVFQSHEQSREALHLV ELDEMFESLDGLIQRVSLLVSGDAGKEESAGVEEPVLIIGKVTTGLIRKEDGDLRTDEMAGLGRSSSSKATFLSGEVKSDEKLSLLKVAAVIENSAKSGA DEPARLVRGVDESN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	0	1
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	2.2	0.8905
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	4.9	0.8696
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	6.3	0.8689
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	8.4	0.8497
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	11.8	0.8243
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	13.4	0.8860
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	15.0	0.8595
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	15.9	0.8390
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10028206 [exp]	19.9	0.8424
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10028917 [exp]	23.7	0.7852

Compare expression of checked genes

Lus10004558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.