Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35470 250 / 2e-80 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 231 / 3e-73 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G11330 145 / 2e-40 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 140 / 9e-39 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G26500 128 / 2e-34 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT1G12970 123 / 1e-32 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT4G26050 119 / 7e-32 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT4G29880 116 / 1e-30 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT2G19330 115 / 2e-30 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT3G15410 77 / 6e-16 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000900 [exp] 431 / 8e-152 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10035976 [exp] 254 / 9e-82 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 234 / 8e-71 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10003229 [exp] 127 / 7e-35 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10017948 [exp] 126 / 1e-33 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10013689 [exp] 124 / 3e-33 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10035622 [exp] 79 / 2e-18 AT2G19330 158 / 8e-48 plant intracellular ras group-related LRR 6 (.1) Lus10021635 [exp] 74 / 2e-15 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 71 / 1e-14 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144100 [exp] 300 / 6e-100 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 300 / 8e-100 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.007G065000 [exp] 267 / 1e-86 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 260 / 5e-84 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.010G046500 [exp] 131 / 1e-35 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.015G083800 [exp] 129 / 2e-34 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.018G139700 [exp] 120 / 5e-32 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 119 / 6e-32 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.012G085600 [exp] 119 / 4e-31 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.015G048800 [exp] 72 / 5e-15 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10004559 pacid=23159379 polypeptide=Lus10004559 locus=Lus10004559.g ID=Lus10004559.BGIv1.0 annot-version=v1.0 ATGGTGAACTTAGATTTGAGCTCAAATCACTTCACTTCCTTACCAGACACCGTAGGAGACTTGTCGAAGCTCAAGACACTGAATGCTGAAACAAATGAGC TCGAGGAGCTTCCTTACACAATCGGAAACTGTTCCTCTCTCACAGAGCTGAGGTTAGATTTCAACAATCTGAAGGGTCTGCCTGAAGCAGTTGGGAAGCT TGAATGCTTGGAAATTCTGACTCTGCACTACAACAGAGTCAAGAGCTTGCCAACCACAATGGGGAATCTCTTGAAACTCAAAGAGATTGATGTCAGCTTC AACGAGCTAGAGTATATACCCGAAAGCCTGTGTTTTGCAGTACAGCTGAAGAAGATAAATGCAGGGAAGAACTTTGCAGACCTGAGAGCGTTGCCCAAAT CCATAGGAAACCTGGAGATGCTTGAAGAGTTGGATATAAGTGATGACCAAATAAGAATGTTGCCTGATTCTTTCAGCCTCCTGTCTAAGCTTAGAGTGTT TCTTGCTCATGAAACCCCTCTAGAAGTACCCCCGAGAGAAGTATGCAAATTGGGCGCTCAGGCTGTGGTGCAGTACATGGCTGACCTTGTCGCAAACAAG GACTCGATATCGTCGCAGAGTTCGAAAAAGGAGAAAGGTATCTGGTTAAGGATCTGCTTGTTCTGTTTCCCGTTCTTCAGTTCTTCCAAATGA
AA sequence Show only first row Show all	>Lus10004559 pacid=23159379 polypeptide=Lus10004559 locus=Lus10004559.g ID=Lus10004559.BGIv1.0 annot-version=v1.0 MVNLDLSSNHFTSLPDTVGDLSKLKTLNAETNELEELPYTIGNCSSLTELRLDFNNLKGLPEAVGKLECLEILTLHYNRVKSLPTTMGNLLKLKEIDVSF NELEYIPESLCFAVQLKKINAGKNFADLRALPKSIGNLEMLEELDISDDQIRMLPDSFSLLSKLRVFLAHETPLEVPPREVCKLGAQAVVQYMADLVANK DSISSQSSKKEKGIWLRICLFCFPFFSSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10022726 [exp]	3.2	0.9372
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	4.7	0.9115
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	4.9	0.9316
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	5.4	0.9378
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10043025 [exp]	6.5	0.9175
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	10.2	0.9087
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	10.7	0.9274
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10034618 [exp]	11.1	0.8767
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	12.0	0.9234
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10000286 [exp]	12.8	0.9187

Compare expression of checked genes

Lus10004559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.