Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17890 389 / 4e-134 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 384 / 3e-132 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 298 / 6e-99 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT3G53710 126 / 2e-32 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 124 / 2e-31 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT5G54310 95 / 4e-21 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 89 / 1e-20 AGD15 ARF-GAP domain 15 (.1) AT3G07940 88 / 3e-19 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G21160 85 / 3e-18 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 84 / 6e-18 AGD13 ARF-GAP domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000903 [exp] 464 / 3e-164 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004562 [exp] 441 / 2e-154 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10000902 [exp] 295 / 1e-98 AT2G35210 201 / 9e-62 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) Lus10004125 [exp] 235 / 2e-75 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2) Lus10003978 [exp] 119 / 6e-30 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023766 [exp] 118 / 2e-29 AT2G37550 485 / 4e-170 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 112 / 3e-27 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10027249 [exp] 98 / 2e-23 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 94 / 8e-21 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092300 [exp] 444 / 4e-156 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.001G142100 [exp] 439 / 5e-154 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.016G095100 [exp] 126 / 3e-32 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.006G084000 [exp] 122 / 8e-31 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2) Potri.012G036900 [exp] 94 / 4e-22 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G127000 [exp] 97 / 8e-22 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 97 / 1e-21 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 95 / 2e-21 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G026400 [exp] 90 / 2e-20 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.004G035800 [exp] 91 / 8e-20 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10004561 pacid=23159370 polypeptide=Lus10004561 locus=Lus10004561.g ID=Lus10004561.BGIv1.0 annot-version=v1.0 ATGGCATCTGGCGATAGTTTCACTGACAAAAACGCTGTGTTCAAGAAACTCAAAGGAAAATCTGAGAACAAGATGTGCTTTGACTGTAATGCAAAGAATC CTACATGGGCATCTGTGACCTATGGGGTCTTCCTTTGCATTGATTGCTCCGCTGTTCATCGTAGCCTCGGTGTTCATGTCAGTTTTGTCAGGTCCACAAC TTTAGACTCATGGACGTCGGAGCAGTTAAGAATGATGGCCTTTGGTGGAAATAACCGGGCACTGGTGTTCTTTAGGCAACACGGGTGGACTGATGGGGGG AAAATTGAGGGCAAGTACTCATCTAGAGCTGCCGATCTGTATAGGCAAATTCTGTCGAAGGAGGTTGCAAAAAGCTTGGCAGAAGAAGTAGTCCTGCCAT TATCACCAGTTGCCTCTCAGACTTCTCAAGGGGTGAATGGACTGGCTGATGTGACTATAACTGATGCTTCTAAAGAAACTTCATTGGCAAAGCCAGAGAA ACCTGATGTAGCTCATTCTTCAGCCCCTCCATCGAAAGCCCCTGCTGTAGTTACTGCTTCTACTGTCAGGAAGCCTCTTGGAGCAAAGAAAACTGGCAAG ACTGGGGGTCTTGGTGCTAAGAAATTCACTGCAAAGCCAACTGAAAGTCTTTATGACCAAAAGCCTGAAGAATTACCCCTTCCTAATCCTTCGTCTTCTG CTAGCAACTCGAAAACCGGGGCATCTCTTGCATCTCGTTTTGATTTTGCTGTTATCAAGGTTGAGGAAACGGATGAAGCCAGAAAGAAATTTTCAAATGC CAAGTCAATTTCATCAGCACAGTTCTTCGGAGATCAAGCGAAATCAGCTGACGTCAGTGCTCAAGCTTCTCTTGAGAAATTCTCGGGTTCTGCAGCCATA TCGAGTGCAGATCTTTTCGGTCACAGCAGCAACGACCCAACCATCGATCTTGCTGCAAGTGATCTGATCAACCGGCTCTCATTCCAGGCACAACAAGACA TTTCCTCTTTGAAGAATATGGCTGGCGAGACGTCGAAGAAGCTTAGTAACATAGCATCTTCATTGATGACTGATATTCAAGACCGAATCATGTGA
AA sequence Show only first row Show all	>Lus10004561 pacid=23159370 polypeptide=Lus10004561 locus=Lus10004561.g ID=Lus10004561.BGIv1.0 annot-version=v1.0 MASGDSFTDKNAVFKKLKGKSENKMCFDCNAKNPTWASVTYGVFLCIDCSAVHRSLGVHVSFVRSTTLDSWTSEQLRMMAFGGNNRALVFFRQHGWTDGG KIEGKYSSRAADLYRQILSKEVAKSLAEEVVLPLSPVASQTSQGVNGLADVTITDASKETSLAKPEKPDVAHSSAPPSKAPAVVTASTVRKPLGAKKTGK TGGLGAKKFTAKPTESLYDQKPEELPLPNPSSSASNSKTGASLASRFDFAVIKVEETDEARKKFSNAKSISSAQFFGDQAKSADVSAQASLEKFSGSAAI SSADLFGHSSNDPTIDLAASDLINRLSFQAQQDISSLKNMAGETSKKLSNIASSLMTDIQDRIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004561 [exp]	0	1
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10024391 [exp]	2.0	0.8291
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	4.1	0.8319
AT2G15560			Putative endonuclease or glyco...		Lus10019845 [exp]	6.5	0.7865
AT5G41620			unknown protein		Lus10003027 [exp]	7.3	0.7534
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	11.0	0.7790
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	12.3	0.7633
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	13.6	0.8065
AT1G02290			unknown protein		Lus10028606 [exp]	13.9	0.7754
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	16.4	0.8103
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	17.0	0.8116

Compare expression of checked genes

Lus10004561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.