Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17890 474 / 9e-167 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 456 / 6e-160 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 422 / 2e-146 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT3G53710 129 / 5e-33 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 127 / 2e-32 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT5G54310 100 / 7e-23 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 95 / 2e-22 AGD15 ARF-GAP domain 15 (.1) AT4G05330 88 / 4e-19 AGD13 ARF-GAP domain 13 (.1) AT3G07940 86 / 4e-18 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G21160 84 / 1e-17 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000903 [exp] 639 / 0 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004561 [exp] 432 / 5e-151 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10004125 [exp] 282 / 6e-93 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2) Lus10000902 [exp] 196 / 2e-59 AT2G35210 201 / 9e-62 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) Lus10023766 [exp] 123 / 5e-31 AT2G37550 485 / 4e-170 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10003978 [exp] 123 / 6e-31 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 113 / 3e-27 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10027249 [exp] 105 / 1e-25 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 100 / 2e-22 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092300 [exp] 555 / 0 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.001G142100 [exp] 537 / 0 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.016G095100 [exp] 128 / 1e-32 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.006G084000 [exp] 126 / 6e-32 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2) Potri.011G127000 [exp] 103 / 9e-24 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 103 / 1e-23 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 100 / 6e-23 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 97 / 7e-23 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 97 / 2e-21 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G026400 [exp] 85 / 3e-18 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10004562 pacid=23159385 polypeptide=Lus10004562 locus=Lus10004562.g ID=Lus10004562.BGIv1.0 annot-version=v1.0 ATGGCATCCAGCGACATCTACAATGACAAAAATGCTCTGTTCAAGAAACTCAAAGGGAAACCTGAGAACAAAATGTGCTTTGACTGTAATGCAAAGAATC CTACATGGGCATCTGTGACGTATGGAATCTTCCTCTGCATCGATTGTTCTGCAGTTCACCGTAGCCTCGGTGTGCATGTTAGTTTTGTCAGGTCTACGAC TTTAGACTCATGGTCACCAGAGCAAATGAGAACAATGGCATTTGGTGGAAACAACCGTGCTCAGGTGTTCTTTAAGCAACATGGCTGGACTGATGGTGGT AAGACTGAAGCCAAGTATACATCCAGAGCTGCAGAGTTATATAAGCAGACTCTTTCAAAGGAAGTTGCAAAAAGCATGGCAGAGGATGTAAGCTTGCCAT CTTCGCTGGTTGCTTCCCAGACAGCTCAAGGGACGAATGGACTTTCGGATTTTCCGAAAACAGATTTTCCTCAAGGAACGTCATTAAGAAAGCAGGAAAC ACCTGTGGCTGCTCCTTCTTCAGTCCCTCCTTCGAAAGTCCCAGCTGTAGTTACAACGTCTGTCACATCTTCTGTCAAGAAGCCTCTCGGGGCAAAGAGA ACTACTGGCAAGTCAGGGGGTCTTGGTGCTAAAAAGCTACCTGCAAAGTCAAGTGAGAATCTGTACGATCAGAAGCCTGCAGAAGCACCTGCTCCTGTTC CATCTTCTTCTTCTTCTAAGAATAACACCACCCTCAAACCTGGTGCTTCTTACACATCTCGGTTCGCGTATGCAGACAATGTCCAGCCGGTGAATACGGT TTCAGGTGGATCAAAGGGGCTTAGCCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCTGATTTCGGAATGGATAACGGCTATAACAAAAAGGAGAAC ACAAATTCCTCCTCAAGAGCTCAAATTCAAGAGAGCGATGAAGCAAGGAAAAAGTTCACAAATGCCAAGTCTATTTCATCGGCCCAATATTTCGGAGACC AGAACAATTCAGCTGATCTTGATGCTCAGAGTTCGTTGCAGAAATTCTCGGGCTCAGCAGCCATCTCAAGTGCCGATTTTTTTGGTCACGACGATGACAA CTCAACCATTGACCTTGCTGCAAGTGATCTTATCAACCGGCTCTCTTTCCAGGCACAACAAGATATATCCTCTCTGAAGAACATTGCAGGAGAAACCAGC AGGAAACTGAGCTCCATAGCTTCTTCATTCATGACCGATCTTCAGGACAGGGTCCTGTAA
AA sequence Show only first row Show all	>Lus10004562 pacid=23159385 polypeptide=Lus10004562 locus=Lus10004562.g ID=Lus10004562.BGIv1.0 annot-version=v1.0 MASSDIYNDKNALFKKLKGKPENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTTLDSWSPEQMRTMAFGGNNRAQVFFKQHGWTDGG KTEAKYTSRAAELYKQTLSKEVAKSMAEDVSLPSSLVASQTAQGTNGLSDFPKTDFPQGTSLRKQETPVAAPSSVPPSKVPAVVTTSVTSSVKKPLGAKR TTGKSGGLGAKKLPAKSSENLYDQKPAEAPAPVPSSSSSKNNTTLKPGASYTSRFAYADNVQPVNTVSGGSKGLSHVSPPKSSSFFADFGMDNGYNKKEN TNSSSRAQIQESDEARKKFTNAKSISSAQYFGDQNNSADLDAQSSLQKFSGSAAISSADFFGHDDDNSTIDLAASDLINRLSFQAQQDISSLKNIAGETS RKLSSIASSFMTDLQDRVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	0	1
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	3.0	0.8146
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	4.2	0.7569
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	7.2	0.7501
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10042140 [exp]	10.5	0.6957
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	11.3	0.7022
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	15.7	0.6361
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	16.4	0.7222
AT1G10750			Protein of Unknown Function (D...		Lus10029116 [exp]	22.8	0.6673
AT5G02440			unknown protein		Lus10016560 [exp]	22.8	0.6429
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022544 [exp]	24.9	0.7510

Compare expression of checked genes

Lus10004562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.