Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46840 299 / 6e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G55340 55 / 1e-07 PHIP1 phragmoplastin interacting protein 1 (.1) AT1G71800 53 / 2e-07 CSTF64 cleavage stimulating factor 64 (.1) AT5G50250 49 / 3e-06 CP31B chloroplast RNA-binding protein 31B (.1) AT3G14100 49 / 4e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G36690 46 / 4e-05 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) AT5G51120 44 / 6e-05 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT2G37220 44 / 9e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 44 / 0.0002 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G09880 44 / 0.0002 Splicing factor, CC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000904 [exp] 611 / 0 AT5G46840 305 / 9e-102 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014814 [exp] 53 / 3e-07 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 53 / 3e-07 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 51 / 1e-06 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10015840 [exp] 45 / 3e-05 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009323 [exp] 45 / 3e-05 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017403 [exp] 45 / 0.0001 AT3G18610 216 / 5e-59 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10006055 [exp] 45 / 0.0001 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1) Lus10042589 [exp] 44 / 0.0002 AT2G21440 825 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140300 [exp] 366 / 2e-122 AT5G46840 365 / 1e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G093900 [exp] 363 / 3e-121 AT5G46840 364 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G061200 [exp] 51 / 1e-06 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.007G095800 [exp] 47 / 9e-06 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.005G073200 [exp] 47 / 1e-05 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.004G143400 [exp] 45 / 7e-05 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.017G051600 [exp] 44 / 7e-05 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G105300 [exp] 44 / 0.0001 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.001G311600 [exp] 43 / 0.0001 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G067500 [exp] 42 / 0.0002 AT5G12190 226 / 4e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10004563 pacid=23159386 polypeptide=Lus10004563 locus=Lus10004563.g ID=Lus10004563.BGIv1.0 annot-version=v1.0 ATGGGTAAGAAGAAGGGCAGCGTAGCAACCACCGAGGAGTCCCCTCCTTCGGACATCTTCACAAAGCTGTTCAGCGGCGGCGACAATGGCGCCGTCGTCA GTTCCCTCTTCTCCGACGAAAACCCTTTCAAACGGAAGCCCGAAGATGCAAAACCTCCAGTTCCCGCGGCCGGAAATCTGGAAGTTGTTAGCGACGTGAA GGAGAAGAAGAAGGAGAAGAAAAAGGAGAAGAAGAAAGAGAAGAATGGTGACAAGGAGGAAAAAAAGACCAAGGAAGATGTGAACGAACCGACGGCAAAG AAGAGGAGAAGAGAGGATGTCGAGAGGGATTACGAGATGAAAAGGTACGGTACAGCTCCGGAGGCTCAGGAAACTGCTGTGCGCGTTGGAGGGAAGAGGA AGAAGCTGGATGCTGATGCTGGGGAGGCTTTAGTTTCGAGGAAGGAGGAGGAGGAAGGGTTTGACGATGAGAAAAAGCTGTTGAGAACGGTGTTTGTTGG GAATTTGCCACCGAAGGTGAAGAAAAAGGCGTTGTTGAAGGAGTTCAGCCAATTTGGGGAGGTTGAGTCTGTGAGGATCCGGTCTGTGCCTGTCATGGAT ACTAAGATACCAAGAAAAGGTGCCATTTTGCAGAATAAAATCAATGAGGCTGCTGGAAGTGTTAATGCATACATTGTATACAAAACAGCCGAGTCTGCTG AGGCATCTCTCTCCCATAACATGGCAGTGGTTGCAGGAAACCATGTTCGTGTTGACAGGGCTTGCCCTCCTCGGAAAAAGTTGAAAGGAGATGACACCTC ACTCTATGATAACAAGAGGACTATTTTTATTGGCAACCTCCCATTTGATGTCAAGGATGAAGAAATTTACCAGCTGTTCACTAGCATCAAAGGTTTGAAT TCCAGCGTTGAAGCTTTTCGAGTGGTTAGAGACCCTCACAATGGCATGGGGAAGGGGATTGCTTATGTAATGTTCAAAGATAAGGAATCTGCCAAGATAG CATTGCAGAGGCGAGGACTAAAAATCCGGGATCGAGAAATTAGGGTTTCTCCTGCTCGGCAAGACACCTCCACCTTGTCAAAGAGGGCTATCCCCTTCCG TGGAGACAGAGGCGAGTTTTCATCTGGCAAGAAGAGGACGATGGCACTGGAAAACAACTCCAACGGTGCGAAGCCAAGTATGGCTTATGAGGGTTGGCGT GCGAAGAAGTCTGGAGTACAAAAGAAACCCAGTTTTCAACTACAAGTAACAACAAGCAAGGCTAAGTTCAAGAAACAGAAAGAGCAGAAGCGTGAAGGGA AAAGGCCAGCTGTTGCTGCAAGGAAGGCTAAGGCACTTAAAGAACTAAGTGGTGATTATAGCAGTGCCGGCAAAGCAACAGGGAAAAAGAGGAAGCTTGG AACCCCTGATAGCAGCAACTGGAAGAAAGCTAAGAAACAAAAGTAG
AA sequence Show only first row Show all	>Lus10004563 pacid=23159386 polypeptide=Lus10004563 locus=Lus10004563.g ID=Lus10004563.BGIv1.0 annot-version=v1.0 MGKKKGSVATTEESPPSDIFTKLFSGGDNGAVVSSLFSDENPFKRKPEDAKPPVPAAGNLEVVSDVKEKKKEKKKEKKKEKNGDKEEKKTKEDVNEPTAK KRRREDVERDYEMKRYGTAPEAQETAVRVGGKRKKLDADAGEALVSRKEEEEGFDDEKKLLRTVFVGNLPPKVKKKALLKEFSQFGEVESVRIRSVPVMD TKIPRKGAILQNKINEAAGSVNAYIVYKTAESAEASLSHNMAVVAGNHVRVDRACPPRKKLKGDDTSLYDNKRTIFIGNLPFDVKDEEIYQLFTSIKGLN SSVEAFRVVRDPHNGMGKGIAYVMFKDKESAKIALQRRGLKIRDREIRVSPARQDTSTLSKRAIPFRGDRGEFSSGKKRTMALENNSNGAKPSMAYEGWR AKKSGVQKKPSFQLQVTTSKAKFKKQKEQKREGKRPAVAARKAKALKELSGDYSSAGKATGKKRKLGTPDSSNWKKAKKQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	0	1
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	1.0	0.9303
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10021909 [exp]	2.8	0.9230
AT1G24560			unknown protein		Lus10013022 [exp]	5.0	0.9200
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	6.0	0.9213
AT2G37480			unknown protein		Lus10023755 [exp]	6.5	0.9179
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10007757 [exp]	10.4	0.9187
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	11.5	0.9098
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	12.7	0.9214
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031107 [exp]	15.5	0.9006
AT4G21580			oxidoreductase, zinc-binding d...		Lus10011233 [exp]	15.9	0.8990

Compare expression of checked genes

Lus10004563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.