Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17790 389 / 7e-138 SNARE associated Golgi protein family (.1) AT1G71940 338 / 8e-118 SNARE associated Golgi protein family (.1.2) AT4G09580 316 / 8e-109 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000905 [exp] 526 / 0 AT4G17790 387 / 2e-137 SNARE associated Golgi protein family (.1) Lus10017913 [exp] 318 / 7e-110 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1) Lus10014818 [exp] 281 / 1e-95 AT1G71940 374 / 2e-132 SNARE associated Golgi protein family (.1.2) Lus10028016 [exp] 48 / 3e-06 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 44 / 8e-05 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 43 / 0.0001 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094000 [exp] 409 / 2e-146 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.001G140200 [exp] 391 / 4e-139 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.013G113000 [exp] 334 / 6e-116 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1) Potri.019G083500 [exp] 325 / 1e-112 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10004564 pacid=23159397 polypeptide=Lus10004564 locus=Lus10004564.g ID=Lus10004564.BGIv1.0 annot-version=v1.0 ATGGAAGGCGTGAGAAACGAGAATCATGTGCATAGTGGAGGAAGGAATGTTCGATCTGGGTTTCCTTTGACCTTTTGGGAGGCGACAGTGGGTTCCATTG TCATTCTGGGATTTGCTTTAGGTCTTCTCCTTGTCTACGTCACTCTCCCTCCTTCGGATTACAGCTTCCTCAAGCTCCCTCGTAACCTACAGGAGCTCCA GACTCTCAGAGATCATCTAGAGACGTACACGAGCGATTACACGGCACAAGTTCTGGTAGGGTACTGCGTGGTGTATGTTTTCATGCAAACCTTTATGATA CCAGGGACTGTGTTCATGTCATTGCTTGCTGGAGCGCTATTCGGAGTCTTCAAAGGTGTAGCTCTGGTGGTGTTCACTGCTACAGCTGGTGCTTCTTCTT GCTTTTTCCTGTCGAAGATTGTTGGTCGCCCTCTGGTGTTCACTCTCTGGCCCGACAAGCTTGTTTTCTTCCAAGACCAGGTGGCTCGCCGAAGGGAGAA ATTGCTCAACTACATGCTTTTCTTGAGACTCACCCCTACATTGCCTAACACATTCATCAATGTGGCTTCACCGATTGTCGATGTGCCTTACCACACGTTC TTCCTCGCTACGGTCATTGGCCTCATTCCTGCTGCCTATATCACTGTCAAGGCTGGAATAGCTCTGGCAGAGCTGCAGTCACTGAAGGATCTGTACGACT TCAACTCAATTGCAGCTATGTTCCTGATAGGGGTTGTTTCGATCACTCCAACTTTGATGGGAAGCAATGAGAAACCGAAGAAGGCAATCGAGTAA
AA sequence Show only first row Show all	>Lus10004564 pacid=23159397 polypeptide=Lus10004564 locus=Lus10004564.g ID=Lus10004564.BGIv1.0 annot-version=v1.0 MEGVRNENHVHSGGRNVRSGFPLTFWEATVGSIVILGFALGLLLVYVTLPPSDYSFLKLPRNLQELQTLRDHLETYTSDYTAQVLVGYCVVYVFMQTFMI PGTVFMSLLAGALFGVFKGVALVVFTATAGASSCFFLSKIVGRPLVFTLWPDKLVFFQDQVARRREKLLNYMLFLRLTPTLPNTFINVASPIVDVPYHTF FLATVIGLIPAAYITVKAGIALAELQSLKDLYDFNSIAAMFLIGVVSITPTLMGSNEKPKKAIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	0	1
AT4G17790			SNARE associated Golgi protein...		Lus10000905 [exp]	1.0	0.9531
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	1.4	0.9213
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	2.0	0.8865
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	2.4	0.8981
AT5G19430			RING/U-box superfamily protein...		Lus10036034 [exp]	2.8	0.8690
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	4.1	0.8541
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	5.0	0.8846
AT5G01960			RING/U-box superfamily protein...		Lus10000996 [exp]	6.5	0.8614
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Lus10012962 [exp]	8.5	0.8428
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	9.5	0.8744

Compare expression of checked genes

Lus10004564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.