Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46800 414 / 1e-146 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT2G33820 140 / 3e-39 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT1G79900 115 / 4e-30 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G48970 93 / 1e-21 Mitochondrial substrate carrier family protein (.1) AT1G25380 91 / 7e-21 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT4G01100 86 / 7e-19 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G21390 81 / 2e-17 Mitochondrial substrate carrier family protein (.1) AT2G47490 81 / 3e-17 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT5G58970 71 / 7e-14 ATUCP2 uncoupling protein 2 (.1.2) AT1G74240 71 / 7e-14 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000906 [exp] 496 / 3e-179 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10015420 [exp] 122 / 8e-33 AT2G33820 415 / 7e-147 Mitochondrial substrate carrier family protein (.1) Lus10037544 [exp] 122 / 1e-32 AT1G79900 408 / 2e-144 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10011451 [exp] 119 / 4e-31 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 93 / 3e-21 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 87 / 3e-19 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 87 / 4e-19 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10001463 [exp] 86 / 5e-19 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10033947 [exp] 86 / 1e-18 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091500 [exp] 438 / 2e-156 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 432 / 4e-154 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.004G046801 [exp] 140 / 2e-39 AT2G33820 453 / 4e-162 Mitochondrial substrate carrier family protein (.1) Potri.011G056000 [exp] 139 / 6e-39 AT2G33820 460 / 9e-165 Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 120 / 4e-32 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.003G053900 [exp] 111 / 2e-28 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 91 / 9e-21 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G210000 [exp] 89 / 5e-20 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G121500 [exp] 87 / 2e-19 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.002G200900 [exp] 87 / 2e-19 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10004565 pacid=23159389 polypeptide=Lus10004565 locus=Lus10004565.g ID=Lus10004565.BGIv1.0 annot-version=v1.0 ATGGGAGACGTTGCAAAGGACTTGGCATCAGGAACAGTAGGAGGGGCAGCACAGCTGGTAGTTGGCCATCCATTTGACACAATCAAGGTTAAGCTCCAAA GCCAGCCAGTGCCACTCCCCGGCCAGCCTCTGAAATACACAGGCGCAATCGATGCTGTCAAGAAGACGATAGCATCCGAAGGTGCCGGAGGATTATACAA GGGCATGGGAGCTCCTCTTGCCACTGTTGCTGCTATGAATGCTGTGCTTTTCACTGTTAGGGGACAGGTGGAGGCTCTGCTGAGGTCCGAACCCGGTGCT ACACTCACCATTGGCCAGCAGGTTGTTTGTGGTGCTGGTGCTGGCGTGGCAGTTTCTTTCCTTGCTTGTCCTACTGAATTGATCAAGTGCAGGCTGCAAG CGCAAAGCGCAGTGGCAGTGGCTGACTCAGCCACTGTTGTAGCAGTGAAGTATGGAGGGCCAATGGACGTAGCTAAACAAGTTTTGAGATCCGAAGGTGG GATAAGGGGACTTTTCAAGGGCTTAGTCCCCACCATGGCTCGCGAAATTCCTGGAAATGCAGCTATGTTTGGGGTCTACGAGCTGCTGAAGCAGTCTATA GCAGGAGGACAGGACACGTCAAACATAGGGAGAGGCTCCTTAATGATGGCCGGAGGTCTAGCTGGCGCATCCTTCTGGGTTTCAGTCTATCCTACCGATG TTGTGAAAAGTGTCATCCAAGTTGATGACTTCAGGAACCCCAAGTACTCGGGCTCCATGGACGCTTTCAGGAAGATCCTGGCGTCGGAAGGTGTTAAGGG TCTGTACAAAGGTTTCGGCCCTGCCATGGCCCGGAGTATCCCTGCCAATGCAGCTTGTTTCCTAGCTTACGAGTTGACGAGATCTAGCCTCGGCTGA
AA sequence Show only first row Show all	>Lus10004565 pacid=23159389 polypeptide=Lus10004565 locus=Lus10004565.g ID=Lus10004565.BGIv1.0 annot-version=v1.0 MGDVAKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPVPLPGQPLKYTGAIDAVKKTIASEGAGGLYKGMGAPLATVAAMNAVLFTVRGQVEALLRSEPGA TLTIGQQVVCGAGAGVAVSFLACPTELIKCRLQAQSAVAVADSATVVAVKYGGPMDVAKQVLRSEGGIRGLFKGLVPTMAREIPGNAAMFGVYELLKQSI AGGQDTSNIGRGSLMMAGGLAGASFWVSVYPTDVVKSVIQVDDFRNPKYSGSMDAFRKILASEGVKGLYKGFGPAMARSIPANAACFLAYELTRSSLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10004565 [exp]	0	1
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	1.0	0.9322
AT1G22750			unknown protein		Lus10028718 [exp]	2.4	0.9075
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10030336 [exp]	4.9	0.8686
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	6.5	0.8819
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	8.8	0.8273
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	8.8	0.8415
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	10.4	0.8421
AT3G47070			unknown protein		Lus10040689 [exp]	15.3	0.8646
AT1G64890			Major facilitator superfamily ...		Lus10024977 [exp]	20.3	0.8401
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	20.5	0.7956

Compare expression of checked genes

Lus10004565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.