Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48770 1650 / 0 DNA binding;ATP binding (.1) AT3G28020 137 / 7e-36 unknown protein AT4G13750 139 / 1e-32 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032551 [exp] 241 / 4e-70 AT3G48770 145 / 9e-38 DNA binding;ATP binding (.1) Lus10016661 [exp] 164 / 4e-40 AT4G13750 2109 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G102700 [exp] 1971 / 0 AT3G48770 1842 / 0.0 DNA binding;ATP binding (.1) Potri.012G103700 [exp] 1970 / 0 AT3G48770 1783 / 0.0 DNA binding;ATP binding (.1) Potri.015G102200 [exp] 1953 / 0 AT3G48770 1833 / 0.0 DNA binding;ATP binding (.1) Potri.015G103100 [exp] 1946 / 0 AT3G48770 1796 / 0.0 DNA binding;ATP binding (.1) Potri.015G103000 [exp] 1884 / 0 AT3G48770 1719 / 0.0 DNA binding;ATP binding (.1) Potri.015G102401 [exp] 785 / 0 AT3G48770 771 / 0.0 DNA binding;ATP binding (.1) Potri.015G102301 [exp] 532 / 6e-173 AT3G48770 389 / 1e-120 DNA binding;ATP binding (.1) Potri.001G317200 [exp] 175 / 2e-43 AT4G13750 2097 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G102501 [exp] 77 / 2e-16 AT3G48770 63 / 7e-13 DNA binding;ATP binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004567 pacid=23159375 polypeptide=Lus10004567 locus=Lus10004567.g ID=Lus10004567.BGIv1.0 annot-version=v1.0 ATGGCGACGCCGAGGCAGCACATTGAAGAGCTTCGGAGGACAAGGTTTTCGATCGGAGAGAAGGAGAACCCCCTTGCTTCCATGCTTGACCAAGCTGTCA AGTACCTCTCCGCTGAACTCTACGCCAAGGACGTTCATTTCCTCATGGAACTCATTCAGAATGCTGAAGATAATGAGTACTCGGACGGAGTGGATCCTTC GCTGGAGTTTGTCATAACGTCGAGGGATATCACCGGCACCGGTGCACCGGCGACTCTGCTCGTATTCAACAACGAGAAGGGGTTTTCCGCCAGGAATATT GAGTCCATATGCAATGTTGGAAATTCCACCAAGAAAGGCAACAGGAAACGCGGCTATATCGGGGAGAAAGGAATTGGGTTCAAGAGTGTGTTCCTGATCA CATCTCGTCCGCACATATTCAGTAATGGATATCAGATTCGTTTCAATGAGAAACCCTGCCAACACTGCAAGCTAGGCTACGTAGTTCCTGAGTGGGTTGA TGATGATGACAAACCCTCCCTTTCCGACATTCGAAACGTCTACGGCTCAGGTTCACTGCCGACCACCACCTTGGTCTTGCCTCTGAAGCTTGACAAAGTG AAGCCCGTCAAGGATCAGCTCTCCATCGTTCATCCTGAGATCTTGCTGTTTCTTTCCAAGATAAAGCACCTCTCCGTCAGGGAGGACAACAATCGAGATA CTACTGTTTCCGAAATTGCGATAACGAAGGAAGTGAACTTTGTGAGCAGGAAGAACATGGATGCAGAGTCGTATACCCTCCATCTGTCCGCCGATGGTCA ATGCAGCAGTTACTATTTGTGGAGGCAGAGGTTTCCTGTGAAACCTGAGTACAGAGTTGACAGCAGAATGGATGTTGAAGAATGGCAAGTCACTTTAGCT TTCCCTAATGGAGAACGTCTTCATAATAATTCATCACCTTCAGCTGGAATCTATGCCTTTCTCCCCACGGAAATGGTCACCAACTTCCCATTCGTAATTC AAGGTGATTTCATTCTGTCGTCCTCTAGGGAAGCGCTGCTGCTTGATAACATATGGAATCGAGGGATTATGGAGTGTGTCCCCTCTGCATTTGTTAATGC ATTGATTTCTCTAGTCAAGACTGTCGAAAACGCTCCTGTTTCGAGTTTGATTCCCATGTTTAAGTTCCTGCCGGTCAATGCTTCTTCCTATCCGCTCCTG AATACTATGAGGGGATCAATTCGGTTGAGGCTACGGAATGAAAGTATTGTACCGAGTGAATCCTGCAAGTTGCAGAAGTTCTTCCACAAGCCTGGTGAAG TTCGTCGTCTTGTTCCTGATTTCTGGGACATCCTGAACAAGGCGAGGATGGAAAGAATCAATCTTGACAATCTTTCGTCCCACGGATGTTATATACTCAA CTCTTCATTCGACGATAAGGCTTATGATGAGGTTTTGGAATTTTTGGGGGTGGGATTTGTTGGAGATGAATGGTACACAAGGTGCATCCAGAGCTCTACT CTTTTGAAGCTGATCTCAGATGATTTATATGTGCAACTACTCCATTTCATTGCTGAGAATTGGTCGACAAACCTGAAAAACGCAAATATGAGAGACATTC CGCTACTCAGACATGTTGGTGGTGATGGTAACGTGTCCATTTGCAGCATCAATGAATCGAAGAATAAAAAGGGTGGGAAGGTATTGTGTCGATGTACTGC CTCTTCGTATGCATCGTTACTTATAGACTGGAATAAGGAGTTGTGGAAGATATCACCGTATTTTTTCATACCGGAAACCACTCAAGCTGTGCTGAGATCG TTTGGGAAGAGGGACATAGTGATCAATTGGCTTACATTTGGTGCTGGACTCGTAAAACTGGACGTGCATGAATATTCGAGGTCGCTTAGCAAATGTCTAG GCGCGGACCGAGAGCTTGCAGTTGCTTATGCTCACTTCTTGTATCGTTCGTACACTGCCAATTTTCTGTCAGTAAATGAAGTTGGTCCTCTATGTCTTGA GATGCCACTAGTTGATAGGTACGGGACTGTGATCAGATCACGGAAGCAAGTTCTCATTCCTGGTGGAGCAAGTAAATGGTTGGAATTGATTGGTACGAAT CCTTGGCGTGGAGAGGGCTTCGTCGAGTTGGGAGAAGAGTACTCCCAGACAAGACGTTTCTGTGGAGAAACCTCTGGTGGGAAACGCTTCATGGATTTTC TTAAAGCTTACGTTCGAGCTTTTGATATACCATATTTGTCTCCTCCAGATGCTGAGATTCCTACTGTGTCGGGACCACTTACAAAGAACAACGCATTTCT ATTGTTGGATTGGATTCAGAACCTCGCAACAAATATTCCAAAGAGGTTCCTTGCTTGCATAAGTAAGGGCAGCTGGTTAAAAGTTACAATGAACGGTTCT TCTGGCTATAAGCCACCATCGCAGTCGTTCATGCTTTCCCCGAGGAAGAAAAGCTCGAAATGGGGCAGCATTTTGCAGGATGGATCTGTGCTGGCAGATA TTCCCTTAGTGGACATCAGTTTTTATGGCGAACATATCATTTCTTACGAGTCGTCTCTCAAGAAAATTGGGGTGATGACCGAATACGAGCAAGCTTGTGA ATATATTGGCAGCCACCTCATGTCACAAGTTGAATCGGGCACTTTGTCGAGAAGCATTGTATTCTCAATTCTGAAATTCATCAGATTCCTGAGGGAGAAT ATTCTGTCCCCGGATGCTTTTATAAAAAGTATAAAGAAAGGAAATTGGTTACGTACAACAACATCACAGTCCTCCTGTCACTCTCCCGATGAATGTGTTC TACGAAATGGGAAATGGGGAATTGCACAGCAAGTCAGTGCACTCAACTTCATTGATGATTCCTACTACGGGCAGGAGATTCATTCATTCGACAAAGAACT CCGATTACTTGGTGTAACAGTTGACTTTGCAGGGAGTCACGAACTTATAGTCAAGCACCTGAAACCAAGTTACTCCTTGTCTGGTCTGACAAAAGAAGCT CTTTTTCTGATCTTGCAATGCATTCGATATTCCACTTCTGCTACCGAAGTCATCACGACAGTACAGAATGCCAAATGTTTGAAGACAAGTTCTGGTTACA GGTATCCTGGCGAATGCTTCGTGTACGATACTGAATGGGGCTACCTTCTGGAGGTTTTCCAATCTTCCTCAGTCATAAAAAATGACTTCTATGGTAATGC TGAAATCATATATTACAAGGAAGAGCTGAAGAAAGTTGGAGCGAAGGTAGATTTCGAGGATGCCACCAAAGCCTTTCTTCACACTTTCAAGGAGCAGGTG TCAAAGATGACAAAACAACATGTTCTTTCTATTCTCTCATGCTACAGACAGTTGAAGAAACTTGCGAAACCTCTTGGCGATATTAAAAAATGCATTCGGT CGGAGAAGTGGCTACGGACAAGGCTCGGTGATTATAGATCTCCAGCAGATTGCATTCTATTCGGTCCTGACTGGGAACATCTCCGTGCAGTTACTTGCCT TCCTTTTGTTGATGACAGTGACAGTAATGGCTATGGAATGGTCATTCATGAGTATGCAGCTGAGCTAAAGATGATGGAAGTGGTTTTTAGCTTGAAAGAC GGCGGGGCTAAGTTCGTGCCTACTTGTCTTCGTTTCCCTGATGATCCATCCACCATCAGTTCGAAAACCGTCCTGTCACTGTTGGACTGCATCAGGATTC TACTGGAGCAGAAAGATTATTCCTTTCCAGAATCTTTAACTGACAAGGTTTCTCGACAATGGCTGAAGACCTCCTTTGGTTACAGGGCTCCAAAGGATTG CTGCTTGTATGATTCCAGTTGGGAGACAGATATGAAGCTCAGTGACGGACCCTTCATTGATGAGTCCTTTTACGGTCCCCTAAATTCATCATATCGGAAA GAACTCGCTAAGCTAGGAGTTCGCGTCGATGCAGCTGAGGTATGCAAGCTACTTTCAAGTGAACTTGACAGGCACTCGGAACTAACCACCATCACTCGAA TATATGATTTCTTGGGTGTAAACAAATGGAAGGCAGAGAAAGAATCAAGAGTGAAGATTTGGTTTCCTGATGGCAGTAGTAGCTCAGGACAGTGGGTAAA TCCAGAAGAATGTGTGATACGTGATAGAGACGATCTCTTTGGTTCTCAGTTGTATGTTCTGGAGAAACATTACAGCAGCAAGTTACTGCCTTTCTTTCAG GAAGCATTCAATGTTCGAAACGGTCCATCCCTTACTGATTACTGTGAGCTTTGGGAGAAATGGGAAAGCTCTTCTTGTGATCACCGTTTGACTCCTTCTG AGTGTTGTGCATTCTGGAAGTTTGTTGTGAGGAATAAGAGCAAATCTACTGAAGGGTTCCTGGCTGGAAAATTGTTGAAGCTCCCTGTTGTTTCGTCATC TGGCGCAGAAATTGTCATGTCTGATAAGCGCGACGTTTTCATAGCTGATGATCTTCTCCTGAAGCAGTTGTTTTCTGAGCATCCGATATTTGTTTGGTAT CCTGAAGCAAGCATGCCATACCTTTCCAGGACTAAGCTGATGGAAGTTTACAAGGGGATTGGAGTACGTGGGATATCGGAGTCGGTGCAGAAAGAAGAGG ATTCCATAAACCAGCAGGAGTTCAAAGAGGTGAATCCAGAGAAGGCTTTCATAGGGAAAGAGCTAGCTAAGATTATACTGGGGTTCCTAGCTGATCCATC GCTTGAAATGGAAGCGAGTCAAAGGCAGGAAAAGGTAAGGTCATTACTTAATCTGACCATATTGAAGACTCTGGAGCCTCTGACTGTAACCTACATCCTG ACGATCTCTTCTACCGGTGAAGTCATAAGAGTTAAGGCCACCGAAATGATTCGCTGGGACAAAGAAGACTCAAAGATGTATGTACAGAAGGTGGAGATGG ACAGTGGGAAGAGAAGTGTGATTGAATATGCTTGCCGTTTTTCAGAAGTGATAGCTAAAGGTGTGCTGTGGGAGAAAGATGATCATATCATAACCGCACT CTCCAGTATAATCAGACTCGGGTTTCTCGTGAAATTTGATGAAGCCGCCGTTGATTTCTTGATGAAGGCCAATAATCTCCAGATCTTTATGGAAGACAAG GAGTTCCTCTCTTCTGCATTTCCTTCCACTTAG
AA sequence Show only first row Show all	>Lus10004567 pacid=23159375 polypeptide=Lus10004567 locus=Lus10004567.g ID=Lus10004567.BGIv1.0 annot-version=v1.0 MATPRQHIEELRRTRFSIGEKENPLASMLDQAVKYLSAELYAKDVHFLMELIQNAEDNEYSDGVDPSLEFVITSRDITGTGAPATLLVFNNEKGFSARNI ESICNVGNSTKKGNRKRGYIGEKGIGFKSVFLITSRPHIFSNGYQIRFNEKPCQHCKLGYVVPEWVDDDDKPSLSDIRNVYGSGSLPTTTLVLPLKLDKV KPVKDQLSIVHPEILLFLSKIKHLSVREDNNRDTTVSEIAITKEVNFVSRKNMDAESYTLHLSADGQCSSYYLWRQRFPVKPEYRVDSRMDVEEWQVTLA FPNGERLHNNSSPSAGIYAFLPTEMVTNFPFVIQGDFILSSSREALLLDNIWNRGIMECVPSAFVNALISLVKTVENAPVSSLIPMFKFLPVNASSYPLL NTMRGSIRLRLRNESIVPSESCKLQKFFHKPGEVRRLVPDFWDILNKARMERINLDNLSSHGCYILNSSFDDKAYDEVLEFLGVGFVGDEWYTRCIQSST LLKLISDDLYVQLLHFIAENWSTNLKNANMRDIPLLRHVGGDGNVSICSINESKNKKGGKVLCRCTASSYASLLIDWNKELWKISPYFFIPETTQAVLRS FGKRDIVINWLTFGAGLVKLDVHEYSRSLSKCLGADRELAVAYAHFLYRSYTANFLSVNEVGPLCLEMPLVDRYGTVIRSRKQVLIPGGASKWLELIGTN PWRGEGFVELGEEYSQTRRFCGETSGGKRFMDFLKAYVRAFDIPYLSPPDAEIPTVSGPLTKNNAFLLLDWIQNLATNIPKRFLACISKGSWLKVTMNGS SGYKPPSQSFMLSPRKKSSKWGSILQDGSVLADIPLVDISFYGEHIISYESSLKKIGVMTEYEQACEYIGSHLMSQVESGTLSRSIVFSILKFIRFLREN ILSPDAFIKSIKKGNWLRTTTSQSSCHSPDECVLRNGKWGIAQQVSALNFIDDSYYGQEIHSFDKELRLLGVTVDFAGSHELIVKHLKPSYSLSGLTKEA LFLILQCIRYSTSATEVITTVQNAKCLKTSSGYRYPGECFVYDTEWGYLLEVFQSSSVIKNDFYGNAEIIYYKEELKKVGAKVDFEDATKAFLHTFKEQV SKMTKQHVLSILSCYRQLKKLAKPLGDIKKCIRSEKWLRTRLGDYRSPADCILFGPDWEHLRAVTCLPFVDDSDSNGYGMVIHEYAAELKMMEVVFSLKD GGAKFVPTCLRFPDDPSTISSKTVLSLLDCIRILLEQKDYSFPESLTDKVSRQWLKTSFGYRAPKDCCLYDSSWETDMKLSDGPFIDESFYGPLNSSYRK ELAKLGVRVDAAEVCKLLSSELDRHSELTTITRIYDFLGVNKWKAEKESRVKIWFPDGSSSSGQWVNPEECVIRDRDDLFGSQLYVLEKHYSSKLLPFFQ EAFNVRNGPSLTDYCELWEKWESSSCDHRLTPSECCAFWKFVVRNKSKSTEGFLAGKLLKLPVVSSSGAEIVMSDKRDVFIADDLLLKQLFSEHPIFVWY PEASMPYLSRTKLMEVYKGIGVRGISESVQKEEDSINQQEFKEVNPEKAFIGKELAKIILGFLADPSLEMEASQRQEKVRSLLNLTILKTLEPLTVTYIL TISSTGEVIRVKATEMIRWDKEDSKMYVQKVEMDSGKRSVIEYACRFSEVIAKGVLWEKDDHIITALSSIIRLGFLVKFDEAAVDFLMKANNLQIFMEDK EFLSSAFPST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	0	1
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	2.6	0.9282
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	4.5	0.9214
AT4G14760			kinase interacting (KIP1-like)...		Lus10041192 [exp]	4.9	0.9113
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	5.7	0.9140
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	11.0	0.8572
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	11.0	0.8839
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10027389 [exp]	11.6	0.8104
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	14.4	0.8580
AT5G42710			unknown protein		Lus10016315 [exp]	16.3	0.9023
AT1G07060			unknown protein		Lus10031286 [exp]	19.4	0.7994

Compare expression of checked genes

Lus10004567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.