Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32340 355 / 1e-115 NHL8 NDR1/HIN1-like 8 (.1) AT2G16090 54 / 1e-07 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT3G27710 54 / 2e-07 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G31510 54 / 2e-07 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT4G34370 52 / 9e-07 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT1G05890 49 / 8e-06 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT3G53690 45 / 5e-05 RING/U-box superfamily protein (.1) AT1G65430 46 / 6e-05 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT2G31780 45 / 9e-05 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT2G31770 45 / 0.0001 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004569 [exp] 445 / 1e-152 AT1G32340 535 / 0.0 NDR1/HIN1-like 8 (.1) Lus10000908 [exp] 443 / 1e-150 AT1G32340 662 / 0.0 NDR1/HIN1-like 8 (.1) Lus10013371 [exp] 68 / 5e-12 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 53 / 4e-07 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10026856 [exp] 52 / 8e-07 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10020229 [exp] 52 / 1e-06 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10011309 [exp] 49 / 8e-06 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10025566 [exp] 48 / 1e-05 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10042348 [exp] 48 / 2e-05 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139400 [exp] 373 / 5e-123 AT1G32340 741 / 0.0 NDR1/HIN1-like 8 (.1) Potri.010G180600 [exp] 55 / 1e-07 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.017G032000 [exp] 54 / 2e-07 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 53 / 4e-07 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.007G126900 [exp] 50 / 2e-06 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.018G064400 [exp] 50 / 2e-06 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.002G131200 [exp] 46 / 5e-05 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.003G187700 [exp] 45 / 7e-05 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.T124304 [exp] 44 / 0.0001 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 44 / 0.0001 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF05773 [flax] [poplar] RWD RWD domain
Representative CDS sequence Show only first row Show all	>Lus10004568 pacid=23159407 polypeptide=Lus10004568 locus=Lus10004568.g ID=Lus10004568.BGIv1.0 annot-version=v1.0 ATGCGTCAGGTTGTTGATAGGATTCGAGCTCAACACAACATTGGTGGTCAGAGACACGCCTGTCCTCTTTGTAGCCAGGTTAATATGAAGCTCGACAGCA AAGAGATTCAGAGTCTAAATATGGCCAGCATGGTAAGGACCGATTCTACTGGCGCCGGAGTTAAACCTCCTCCGCCTGAAACGCCGCCACAACCAATGTC GCCGGACATCGAGGTGAAGAAGCCAGAGCTGTCTCCTGATCAGCTCAAGATCAACGATCAATTGCAGGAGGATGAGTTGCTTGCAATGGAGTCTATCTAT GGAGAAAAAGTCGTCATTCTGGACAGGAAACAAGGCCTGAGATCTTTCCAAGTTAGAATCGAGGCTAAAATTCCTGAAGAAGAACTTAACGTAACAGCAA AACTCACGGAAAGCACTGGAGACGACGATTTCTCATACTCTTTCAAAGTCAAGTTTCTTCCTCCAATTGTGTTGACCTGCACATTCCCTAGATCATACCC AAGCCACAAGCCTCCATGGCAGGAAGTTGTGTACCAGTGGGTTGAGTGGCTTGAAATCAATTCCCTTTCCCACGTTGATGTCCATCTAGAGATCATACTA AGAAGTTCCTCCCCGGATGTTGATGTTCCTTACCTGAAGAGGTATAACGATGAGCAAGGCCTTGAGCGGTTCGTTAACAGTTTGCAGGAGTGCTGCATCT GCTTTACTGAGCTTCCAGGTAGCAGCTTCGTTCGACTATCGTGTGATCATTACTACTGCTGGAACTGCATGAAGGGCTTCTCCTACGTGCATGTTTCAGA AGGTACACTGTATAAGCTTCGGTGTCCTGGTTCAAAATGTGAGGGGATAATACCACCAAGTGTGTTGAAACAGTTGCTTGGCGATGAAGAATACGAACGA TACGAGTCTGTGATGCTGGAGAAGACGCTAGAGTGTATGCCAGACGCGGTGTACTGCCCGAGATGTGACACGATCTGCTTTGAAGATGAAGAACATTTCG CCCACTGCCATAACTGCTTCAACAGCTTTTCCTCAATTTGCAAAGAGAAGCGTCATCTAGTTACTGAAACGTTATGTCGCACAAAGGGACGGTTGCTGTC ATCCCAACTGAACGAGAAACAAAGGCGTGCTGAGAGGAACAAGATCAACGATTTCCTGAACGAGAGGGAGATAGCTCGTAATACGAAGCAATGTCGGTGT AGGATAGCAATCTCAAGAACCGAAGGCTGCAACAACATGGTGTGTGGCAACTGTGGGAACTACTTCTGTTACCGTTGCACCAGATCTATTGAAGGATATG AACATTTCAGGCACGTACCCCAACTGACTTTTGTTGAATTGATGTTATCTGAACCAAAGACGACAACAACTATACCTATTGCTGGGGGTGTAAGAACCAC TACTGTTAGTTGTGCCGGAAAGTAG
AA sequence Show only first row Show all	>Lus10004568 pacid=23159407 polypeptide=Lus10004568 locus=Lus10004568.g ID=Lus10004568.BGIv1.0 annot-version=v1.0 MRQVVDRIRAQHNIGGQRHACPLCSQVNMKLDSKEIQSLNMASMVRTDSTGAGVKPPPPETPPQPMSPDIEVKKPELSPDQLKINDQLQEDELLAMESIY GEKVVILDRKQGLRSFQVRIEAKIPEEELNVTAKLTESTGDDDFSYSFKVKFLPPIVLTCTFPRSYPSHKPPWQEVVYQWVEWLEINSLSHVDVHLEIIL RSSSPDVDVPYLKRYNDEQGLERFVNSLQECCICFTELPGSSFVRLSCDHYYCWNCMKGFSYVHVSEGTLYKLRCPGSKCEGIIPPSVLKQLLGDEEYER YESVMLEKTLECMPDAVYCPRCDTICFEDEEHFAHCHNCFNSFSSICKEKRHLVTETLCRTKGRLLSSQLNEKQRRAERNKINDFLNEREIARNTKQCRC RIAISRTEGCNNMVCGNCGNYFCYRCTRSIEGYEHFRHVPQLTFVELMLSEPKTTTTIPIAGGVRTTTVSCAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004568 [exp]	0	1
AT4G33890			unknown protein		Lus10011423 [exp]	6.2	0.8314
AT2G31945			unknown protein		Lus10039201 [exp]	17.5	0.8642
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10001775 [exp]	22.4	0.8338
AT3G13600			calmodulin-binding family prot...		Lus10039178 [exp]	28.7	0.8589
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10035526 [exp]	45.7	0.7741
AT5G47550			Cystatin/monellin superfamily ...		Lus10027320 [exp]	69.3	0.8113
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	74.0	0.8129
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10021193 [exp]	87.6	0.7965
AT5G59190			subtilase family protein (.1)		Lus10004682 [exp]	89.0	0.7935
AT3G50120			Plant protein of unknown funct...		Lus10006802 [exp]	95.7	0.7779

Compare expression of checked genes

Lus10004568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.