Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32340 494 / 4e-169 NHL8 NDR1/HIN1-like 8 (.1) AT3G14250 78 / 1e-15 RING/U-box superfamily protein (.1) AT2G31780 77 / 1e-14 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT2G31760 75 / 4e-14 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT4G34370 73 / 2e-13 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT2G31510 73 / 2e-13 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT3G27710 71 / 6e-13 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G16090 71 / 9e-13 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT1G05890 71 / 1e-12 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31770 69 / 4e-12 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000908 [exp] 872 / 0 AT1G32340 662 / 0.0 NDR1/HIN1-like 8 (.1) Lus10004568 [exp] 437 / 1e-149 AT1G32340 382 / 5e-126 NDR1/HIN1-like 8 (.1) Lus10013371 [exp] 92 / 2e-19 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 71 / 9e-13 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10026856 [exp] 69 / 4e-12 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10020229 [exp] 67 / 2e-11 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10025566 [exp] 67 / 2e-11 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10042348 [exp] 66 / 5e-11 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10040508 [exp] 62 / 5e-10 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139400 [exp] 530 / 0 AT1G32340 741 / 0.0 NDR1/HIN1-like 8 (.1) Potri.002G131200 [exp] 77 / 1e-14 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.003G187700 [exp] 71 / 2e-13 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 72 / 3e-13 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.008G077100 [exp] 72 / 6e-13 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 70 / 2e-12 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 69 / 4e-12 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 69 / 4e-12 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.017G032000 [exp] 68 / 7e-12 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.002G131300 [exp] 67 / 2e-11 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF05773 [flax] [poplar] RWD RWD domain CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10004569 pacid=23159369 polypeptide=Lus10004569 locus=Lus10004569.g ID=Lus10004569.BGIv1.0 annot-version=v1.0 ATGCCCAAAGGGGTAACGGGGGAGTCTAGCGTTGAATCCTCTCATCTGCCAAAAGCGACGCTGGAACCGCAACCAAGTTCCCGGCGGCCAGCTCGCCGAC GACGAAACGCGTCCTCCAAGAAGGAGTATGTGAAGAAATCCGACTTGGGTTCTCCGAATTCGCAGCAAATCGAGGTGGGTTTTCCGAGTTCAGCTGAGGA GCAAGATGGGGTGCAGGGGAAGGCGGTTGAAAGTAAGGAAGACCAAGTCGGGGAAGCATCATCGGAAGGCGGCGGCGTGGTTGATGTCATTAGCGTGTTG GAAGAGTTACAGTTAGCTGCAAAGGAGCTGGAGCTGTCTGCAGATCAGCTCAGAGTCAACGACCAATTACAGGAGGATGAGTTGCTTGCATTGGAGTCTA TCTATGGAGAAAAGGTCGTCATTCTGGACAGACAGAAAGGCTTGAGATCTTTCCAGATTTATATCGAAACCAAAGTTTCTGAAGATTTTGCTATAACCAC GAATCTGAACTCTTCAAGACCGACCAAGACTGAGAGCACAAGTACGGATGATTTCTCATATTCCTTCGAAGTCAAGTTTCTTCCTCCAATTGTGTTGACC TGCACATTCCCTACATCGTACCCAAGCCACAAACCTCCATATTTCACCATATCTGTTCAGTGGTTGGATTCACTTCGAATCTCGGAGCTTTGTTCTGTGC TGGATTCGATATGGATGGAACAGCAGGGGCAAGAAGTTATGTACCAATGGGTTGACTACCTACAAAGCAATTCTCTTTCTCACCTTGGTATCCATCAAGA GATGGTACTCGGTCCTTATGGAACAATGCATACCAGAGGAGACAGACGTGCAGTTTCGGGGATTGTGTCCCCGGATGTTGATATTCCTTCGCTGAAGAGG TATAATGATGAGCAAGGCCTTGAGAATTTCCTTAACAACTTTCAAGAGTGCTGCATCTGCTTCTCTGAGCACCCTGGCAGCGACTTCATCAAACTCTCGT GTAAGCATTTCTTCTGCCGCAGCTGCATGAAGTCTTATTCAAGCATACATGTCTCAGAAGGCACTGTGTATAAACTTCAGTGTCCCGAGGCGAAATGTGG GAATATGATACCACCGAGTATACTAAAGCAGTTGCTTGTGGAAGAAGAATACGACCGCTACGAGTCACTAATGCTACAGAAAACGCTTGAGTGTATGTCG GACGTTGTGTGCTGCCCGAGGTGTGAAATGATCTGCATCGAAGACGAGCAAAACTTTGCTCAGTGCCCTAGTTGCTTCTACAGCTTCTGCTCCCTCTGCA AGGACAAACGCCATGTCGGTGAGGCTTGCCTAACCCCGGAGTTGAAGATGTACATATTACAGGAGCGGATGAAGTCCTCTCCAATCAGCGAGAAACAAAG GCTTGCGGAGATGAGTAAGATCAACGAAGTCCTGAGTGAGACTGCAATATCTCGTGATTCCAAGCAATGCCCGATTTGCAGCATGGCGATTTCCAGAACC GGCGGCTGCAACAAGATGGTGTGTAGCTACTGTGGGAACTGCTTCTGTTACGCTTGTAACAAACCGATTGGAGGATACGAACACTTCAAGTAA
AA sequence Show only first row Show all	>Lus10004569 pacid=23159369 polypeptide=Lus10004569 locus=Lus10004569.g ID=Lus10004569.BGIv1.0 annot-version=v1.0 MPKGVTGESSVESSHLPKATLEPQPSSRRPARRRRNASSKKEYVKKSDLGSPNSQQIEVGFPSSAEEQDGVQGKAVESKEDQVGEASSEGGGVVDVISVL EELQLAAKELELSADQLRVNDQLQEDELLALESIYGEKVVILDRQKGLRSFQIYIETKVSEDFAITTNLNSSRPTKTESTSTDDFSYSFEVKFLPPIVLT CTFPTSYPSHKPPYFTISVQWLDSLRISELCSVLDSIWMEQQGQEVMYQWVDYLQSNSLSHLGIHQEMVLGPYGTMHTRGDRRAVSGIVSPDVDIPSLKR YNDEQGLENFLNNFQECCICFSEHPGSDFIKLSCKHFFCRSCMKSYSSIHVSEGTVYKLQCPEAKCGNMIPPSILKQLLVEEEYDRYESLMLQKTLECMS DVVCCPRCEMICIEDEQNFAQCPSCFYSFCSLCKDKRHVGEACLTPELKMYILQERMKSSPISEKQRLAEMSKINEVLSETAISRDSKQCPICSMAISRT GGCNKMVCSYCGNCFCYACNKPIGGYEHFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004569 [exp]	0	1
AT1G78010			tRNA modification GTPase, puta...		Lus10006309 [exp]	1.0	0.7272
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10039143 [exp]	14.5	0.7030
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011012 [exp]	15.9	0.7239
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10026886 [exp]	18.0	0.7043
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10030681 [exp]	19.9	0.6410
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10038844 [exp]	21.5	0.6446
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	29.0	0.7194
AT2G27710			60S acidic ribosomal protein f...		Lus10014070 [exp]	32.5	0.6893
AT3G59390			unknown protein		Lus10007819 [exp]	60.6	0.6277
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	63.5	0.6017

Compare expression of checked genes

Lus10004569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.