Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59900 290 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 271 / 8e-79 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 273 / 1e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 273 / 3e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13800 264 / 1e-75 FAC19 embryonic factor 19, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31840 261 / 9e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G54980 260 / 4e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 261 / 7e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 250 / 1e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 259 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000909 [exp] 1464 / 0 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 300 / 3e-88 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 299 / 1e-87 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 294 / 4e-87 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 289 / 1e-84 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 284 / 1e-83 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 284 / 8e-82 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010407 [exp] 282 / 1e-81 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 276 / 8e-81 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139300 [exp] 503 / 8e-167 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 316 / 5e-93 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 292 / 3e-85 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 284 / 3e-84 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 281 / 7e-83 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 282 / 1e-80 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 278 / 1e-80 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 271 / 1e-79 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 273 / 8e-79 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 265 / 6e-78 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004570 pacid=23159391 polypeptide=Lus10004570 locus=Lus10004570.g ID=Lus10004570.BGIv1.0 annot-version=v1.0 ATGGCTTTTCTTTGTCTGCATTCACATTGGTTTAGGAGAGCTTGGTTGGTTGATTGCGCATTTTCTCCATTTGCGAAGAGCTCCTTCAGGAACTGTCTTC TTCCATCTTATATGCACCATTGTTGGAGGATGCACATCAAGTGTTCGATGTTTTCCCCCTTGGTTGAATTCACTGCTGATGTAGAGGAAAAATCTGCTGT TTCTAGCAAGAAGGTTAGTGATCAAGAAACGGGCAAGTTGTTTCCATTTGTCACCACGTTTTTCAAGAATTTGACTTGGAGGTTAGCTAGGAAGGCCGAG TCTTCCGAAGCGGGGTTAGAGAATAGTATACAAATATTGCTTAGGGGAGTTGTTTCTTCTTACCAGGAAGCTGGTTTGGATGTTCTAGAGTTATCTCGTT GTATGTTACATTCGCCTGAGCTTGTTGGAGAGTTACCTTCCGTGTTTAGTGTATTCATAAAGGTTCTGGCGGAGAAGAAGATGCTGGAAAATGCTGTTGG GGTGTTTGTGCAGGCTAGGGAGAATAAGGTTGAACCACATATCCGTTCATGTAATTTCCTTCTCAAACTTTTAGTGGAAGGGAAGGAAGCTGAAGTATTT ATGGATGTGTTCGAGCAGTTGAGAAATTTTGGTCCTCGCCCGAATGTGCATACCTACACCATTGTCTTGAACTTCTACAGGAGCATTGATTTTGTACAGA AGGTAGACCTTGAACGGGCAATGCTTGAGGTGCTTGATGAAATGGTCAGCTTCGGGCTAACCCCGTCAGTTGTTACTTACAGTACGTTTGTCCATGCTCT TTGTGAAGCTGGTTGCGTTGAGTCTGCTTTGAACTATGTACGGGGTTGGAGGAATACGGCCTGTTACTTCAATAGCTATTGTTATAATGCTATCATTCGT GGATTTTGCCATAAAGGTAAAGTGGATGCAGCATTGGAGCTTTTGGAAGAAATGAGGAGATGTTCAGTATCTCCAGACGTTTACAGTTACAGCATCTTGA TTCACGGGTTCTGCCAGAAGGGTGACATTGAGAAGGGTTGCAGTTTGTGGAAAGAAATGGGAGATTGGAACATCATGCCAAATATTGTTACGTTTACCTC CCTCTTTTCATCTCTCTGTAAAACTGGATGGGTGACCTATCTTTTGGCGAAATCTCATCTCATTGGTGACGATGAATTTGAATATGACATGACTTGTTAT AACATCTTGATTGAAAGCTGGCTCATGTCAGGTAATTTAAGCATGGCCAATGAACTTTTGAAGGAGATGACTATGAAGGGCTTGAATCCTGAACCCTTTA CATTTAACAGGTTGATTCAAGCGTTCTCCAAAGATGGGCGCTTAAAAGAAGGCTTGGAAGTGTTTAATATGATGCAAGAAGCTCTCGTCACCCCTAATAT CTTCACCTGCAATGCGGTTGTGGACATGTATTGTAGGGATGGACGGCTGTTAGAAGCTCTTAAGGTCATGGATGACATGCAAAATCAAGGTATTGTTCTC AACTCCTGCACATACCACATAGTAATTAAGTTGTTGTGCCTCAAAGGAATGCCAGAGAAAGCATGGGAAGTCTTTCCTGTAATGTTTAAGAGCGCTGTTT TTCTCGATGTTGATCATTACAATATCCTTATGAATGGTTTTTCCAAACAGTCAAAACCAAATGCTGCATTGATGCTGTATAATAAAATGATAGAAGTTGG ATTGGAACCCAACAAGCTTACATACACGGTTCTCATCAACATTTTCTCAAGGAATAGGAGAATGGATCTTGCCTACCGTTTGTTCATGAAGATGACTGAA AAAGGTATCACTCCAGATCAAATTGCATATGCATCAGTTGTAGTTGGGTTCTGTAGAATCGGAGATATGGAAGCTGCTGATGATGTATACAAGCAAATGT TGAAGATAGGCCGCCACACCCCTGATGTTGTAACCTATACTGCTCTAATGAATGGATATTGCAAGATAAACCGCATGGATAGGGCTTGTGCATTATTTGA AGATATGGAACGGAAAGAGTGTGTTCCAAATGTGGAGATGACAGAAAAAGGTATCACTCCAGATCAAATTGCATATGCATCTGTTATAGTTGGGTTCTGT AGAATCGGAGATATGGAAGCGGCTTTTGAATTATACAAGAAAATGTTGAAGATAGGTCGCATCCCTGATGTTGTAACCTATACTGCTCTAATGAATGGAT ATTGCAAGATAAACCGCATGGATAGGGCTTGTGCATTATTTGAAGATATGGAACGGAAAGAGTGTGTTCCAAATGTGGTAACATACACTGTTCTCATCAA AATTTTCTCAAGTAAAAGGAGTATGGATGTTGCCTACCGTTTGTTCAAGGAGATGACTGAAAAATGTATCAATCCAGATGAAATTGCATATGCATCTGTT ATAGTTGGGTTCTGTAGAATCGGAGATATGGAAGCGGCTTTTGAATTATACAAGCAAATGTTGAAGATAGGCCGCATCCCTGATGTTGTAACCTATACTG CTCTAATGAATGGATATTGCAAGATAAACCGCATGGATAGGGCTTGTGCATTATTTGAAGATATGGAACAGAAAAATTGTGTCCAAATGCAGTAA
AA sequence Show only first row Show all	>Lus10004570 pacid=23159391 polypeptide=Lus10004570 locus=Lus10004570.g ID=Lus10004570.BGIv1.0 annot-version=v1.0 MAFLCLHSHWFRRAWLVDCAFSPFAKSSFRNCLLPSYMHHCWRMHIKCSMFSPLVEFTADVEEKSAVSSKKVSDQETGKLFPFVTTFFKNLTWRLARKAE SSEAGLENSIQILLRGVVSSYQEAGLDVLELSRCMLHSPELVGELPSVFSVFIKVLAEKKMLENAVGVFVQARENKVEPHIRSCNFLLKLLVEGKEAEVF MDVFEQLRNFGPRPNVHTYTIVLNFYRSIDFVQKVDLERAMLEVLDEMVSFGLTPSVVTYSTFVHALCEAGCVESALNYVRGWRNTACYFNSYCYNAIIR GFCHKGKVDAALELLEEMRRCSVSPDVYSYSILIHGFCQKGDIEKGCSLWKEMGDWNIMPNIVTFTSLFSSLCKTGWVTYLLAKSHLIGDDEFEYDMTCY NILIESWLMSGNLSMANELLKEMTMKGLNPEPFTFNRLIQAFSKDGRLKEGLEVFNMMQEALVTPNIFTCNAVVDMYCRDGRLLEALKVMDDMQNQGIVL NSCTYHIVIKLLCLKGMPEKAWEVFPVMFKSAVFLDVDHYNILMNGFSKQSKPNAALMLYNKMIEVGLEPNKLTYTVLINIFSRNRRMDLAYRLFMKMTE KGITPDQIAYASVVVGFCRIGDMEAADDVYKQMLKIGRHTPDVVTYTALMNGYCKINRMDRACALFEDMERKECVPNVEMTEKGITPDQIAYASVIVGFC RIGDMEAAFELYKKMLKIGRIPDVVTYTALMNGYCKINRMDRACALFEDMERKECVPNVVTYTVLIKIFSSKRSMDVAYRLFKEMTEKCINPDEIAYASV IVGFCRIGDMEAAFELYKQMLKIGRIPDVVTYTALMNGYCKINRMDRACALFEDMEQKNCVQMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10004570 [exp]	0	1
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	1.7	0.9543
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	3.5	0.9413
AT4G03090			sequence-specific DNA binding;...		Lus10024745 [exp]	6.2	0.9314
AT4G24610			unknown protein		Lus10015962 [exp]	7.2	0.9170
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	11.2	0.9114
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	12.3	0.9227
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	14.0	0.9227
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	14.9	0.9278
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	15.0	0.9313
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	15.7	0.9296

Compare expression of checked genes

Lus10004570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.