Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25960 1633 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1570 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28860 1056 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G27940 1033 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 1011 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT2G36910 967 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT2G47000 883 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G62150 861 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G02520 860 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT4G01830 859 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030674 [exp] 1034 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 1033 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10005249 [exp] 1032 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017270 [exp] 1000 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10023929 [exp] 994 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 962 / 0 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10000910 [exp] 914 / 0 AT4G25960 808 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10010067 [exp] 899 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038049 [exp] 886 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094400 [exp] 1719 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 1701 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 1595 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G081100 [exp] 1053 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.002G019600 [exp] 1035 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.016G093600 [exp] 982 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 981 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G354900 [exp] 897 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.002G187500 [exp] 885 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113500 [exp] 880 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10004571 pacid=23159378 polypeptide=Lus10004571 locus=Lus10004571.g ID=Lus10004571.BGIv1.0 annot-version=v1.0 ATGGAAGAGATAGGAAAACGAAGAATGAGTTCAAGCACAGTGACACTTCCCACCACCAACAATAAGGAAGATGATGATAACAAGCAAGAAAATAACAATG AGACTTACAAAGTTCCATTGCTGAAGTTGTTTTCATTTGCTGATTTCTATGACTATGTCCTCATGGCATTTGGCTCTATTGGAGCTTCTGTCCATGGTGC CTCAGTTCCTGTCTTCTTCATCTTCTTCGGCAAGTTGATCAACATCATTGGCCTTGCTTATCTCTTCCCTAAGGAAGCTTCACACAAAGTTGCCAAGGCA GGGAACTTCTTGCACTATTTTAGTAGATTCTTATCTGGGTTCATCATTGGGTTTGCCAAGGTGTGGCAAATCAGCTTGGTGACACTTTCCATAGTTCCTT TCATTGCACTTGCTGGAGGTATCTATGCATATGTCACCATCGGTCTTCTTGCCAGAATCCGTAAATCCTATGTGAAAGCTGGCGAAATAGCGGAAGAGGT GATTGGCAATGTGAGGACAGTGCAAGCATTTGCAGGAGAGGAAAGGGCAGTAAGATCCTACCGAGACGCGTTAAGCAAAACTTACGAGTATGGGAGGAAA GCGGGATTAGCGAAAGGTCTTGGACTTGGGAGTGTCCATTGTGTTCTCTTCTTTTCCTGGTCGTTGCTAGTTTGGTTCGTCAGCATTGTTGTTCACAAGA ACATCTCCAATGGAGGCGAGTCCTTCACCACTATGCTTAATGTGGTCATTTCAGGCCTGGCACTGGGACAGGCAGCTCCGGATATCACTGCATTCGTAAG GGCCAAAGCAGCAGCAGGTCCTATTTTCAAGATGATAGAGAGGAGCACAGTGAGTAAAACCAGCTCAAAAACTGGGAAAAAGTTAACCAAACTGGAGGGT CACATCCAATTCAAGGACGTTACTTTTAGATACCCTTCTCGCCCTGATGTAACTATATTCAACAAGCTTCGCCTAGACATACCTTCTGGGAAGATTGTGG CTCTTGTTGGAGGAAGTGGCTCTGGAAAGAGCACAATCATATCCCTGATTGAACGCTTTTATGAGCCACAATCAGGGCAGATACTTATAGATGGGCTTAA CATCAAGGACTTCGATTTGAAGTGGCTGAGAGAGCAGATTGGCCTGGTTAATCAGGAGCCTGCCCTGTTTGCGACCAGCATTAGGAAGAATATCCTCTAT GGGAAAGATGATGCCACAACTCAAGAGATCACCCATGCAGCTAAGCTCTCAGAAGCATTGTCATTTATCAACAACCTGCCTGACAGATTCGAAACTCAGG TTGGGGAGAGAGGAGTACAATTATCAGGTGGACAAAAGCAGAGGATAGCAATATCTCGTGCAATAGTGAAGAACCCATCAATTCTTTTGCTAGATGAAGC TACAAGTGCACTAGATGCTGAGTCAGAAAGAAGCGTTCAGGAGGCCCTCGATCGAGTCATGGTTGGGAGAACTACTGTTGTTGTAGCACATCGGCTTTCC ACTGTTAGGAATGCTGATATAATTGCTGTTGTTCAAGAAGGCAAGATTGTGGAAATTGGCAGCCATGAAGATCTTATCTTGAACCCAGACAGTGCCTACG CATCACTTGTTCATCTACAAGAAGCTGCATCACAGCAACAACGCCCTCCCTTTGGTCCTACAATCGAAGATCAGCTCAGTGCAAAGTTTTCTCGGGAATT ATCCCGGACTAGATCAAGCTTTGGAGCAAGTTTCCGTTCTGATAAGGACTCAGTCAATCGAGCTGTTCTGGACGGGACAGAACCAGCCAAGCCAGTCACT GTTTCAGCAAGAAGACTATATGCTATGATCGCCCCTGACTGGATTTATGGAGTCTCTGGTACCATTGGTGCCTTTATTGCCGGAGCACAGATGCCACTTT TTGCACTTGGTGTATCACATGCTCTTGTATCCTACTACATGGACTGGGATACGACTCAGCATGAGATCAGAAGGATAGTAATCTTCTTCTGCTGCGGTGC AGTAATAACAGTCATTGCTCATGCAATTGCACATCTATCGTTTGGGATAATGGGAGAGAGACTTACTTTCCGTGTCAGAGAAAAGATGTTTTCTGCCATC TTGCATAACGAGATTGGATGGTTTGATGATGCAAATAACACAAGCTCAATGCTCACATCACGTCTGGCAACCGATGCAACACTCTTGAGAACTATTGTAG TTGACCGCTCCAGCATTCTCCTTCAAAATGTTGGTTTGGTAGTTACATCATTCATCATTGCATTCATCCTAAATTGGAGAATCACAGCTGTTGTGTTAGC CACATACCCGCTGATCATCAGTGGCCACATCAGTGAGAAACTATTCATGCAAGGTTATGGTGGCAATTTGAGCAAAGTGTACCTCAAAGCTAACATGCTG GCTGCTGAGGCTGTAAGCAACATCCGCACTGTTGCAGCATTCTGTGCAGAAGACAAGGTCCTTGACCTTTATGGGCATGAGCTTGTGGAGCCTTCCAAAC GTTCATTTACGCGTGGTCAGATCGCAGGGATATGTTACGGGATATCCCAGTTCTTCATTTTCTCGTGTTATGGACTCGCTTTATGGTATGGTTCTGTTCT GATGGGGAAAGAGCTTGCTAGCTTCAAGTCAGTCATGAAGTCATTCATGGTCTTGATTGTAACAGCATTAGCAATGGGTGAAACTCTGGCATTAGCTCCA GATCTTCTGAAAGGGAACCAAATGGCTGCATCTGTCTTCGAGTTGCTGGACCGTAAATCGCAAATGGGTGGAGATGCTGGAGAAGAGTTGACGAAAGTAG AGGGTAAGGTTGAGTTAAGAGACATCCATTTCATATATCCAGCCAGACCAGAAGTTACCATTTTCAAGGACTTCAATCTGCAAGTGCATTCAGGCAAAAG TGTGGCTTTAGTAGGCCAAAGTGGCTCTGGTAAAAGTTCTGTTCTTGCTCTCATCCTTCGCTTCTATGATCCAATGGGAGGAAAAGTGCTGATTGATGGA AAAGACATCAAGAAACTCAACTTGAGATCACTTCGGAGACACATTGGTTTAGTCCAGCAAGAACCAGCTCTCTTTGCAACGTCAATCTATGATAACATCC TGTATGGGAGAGAAGGGGCCACCGAAGGAGAAGTGATTGAAGCAGCTAAACTTGCCAATGCACATAGTTTCATCAGTGCCCTTCCTCAGGGTTACTCAAC AAAAGTAGGTGAACGTGGGGTCCAATTATCTGGTGGCCAGCGGCAAAGGGTTGCCATTGCTCGAGCAGTGCTAAAGAACCCCGAAATCCTGCTGTTAGAT GAAGCCACCAGCGCTCTGGATGCAGAGTCAGAGAACATTGTGCAGCAAGCACTGGACAGATTAATGAGAAACCGTACAACTCTCATGGTGGCGCACAGAC TGTCAACCATAAAAAATGCAGATCAAATATCAGTCATACAAGATGGAAAAATAATCGAACAAGGGACTCATTCGAGTCTTGTACAGAAGACAGATGGTGC GTACTTTAAGTTGATCAACCTTCAACAGAAGCAACAAAAGGATGGTCAGCCGTGA
AA sequence Show only first row Show all	>Lus10004571 pacid=23159378 polypeptide=Lus10004571 locus=Lus10004571.g ID=Lus10004571.BGIv1.0 annot-version=v1.0 MEEIGKRRMSSSTVTLPTTNNKEDDDNKQENNNETYKVPLLKLFSFADFYDYVLMAFGSIGASVHGASVPVFFIFFGKLINIIGLAYLFPKEASHKVAKA GNFLHYFSRFLSGFIIGFAKVWQISLVTLSIVPFIALAGGIYAYVTIGLLARIRKSYVKAGEIAEEVIGNVRTVQAFAGEERAVRSYRDALSKTYEYGRK AGLAKGLGLGSVHCVLFFSWSLLVWFVSIVVHKNISNGGESFTTMLNVVISGLALGQAAPDITAFVRAKAAAGPIFKMIERSTVSKTSSKTGKKLTKLEG HIQFKDVTFRYPSRPDVTIFNKLRLDIPSGKIVALVGGSGSGKSTIISLIERFYEPQSGQILIDGLNIKDFDLKWLREQIGLVNQEPALFATSIRKNILY GKDDATTQEITHAAKLSEALSFINNLPDRFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESERSVQEALDRVMVGRTTVVVAHRLS TVRNADIIAVVQEGKIVEIGSHEDLILNPDSAYASLVHLQEAASQQQRPPFGPTIEDQLSAKFSRELSRTRSSFGASFRSDKDSVNRAVLDGTEPAKPVT VSARRLYAMIAPDWIYGVSGTIGAFIAGAQMPLFALGVSHALVSYYMDWDTTQHEIRRIVIFFCCGAVITVIAHAIAHLSFGIMGERLTFRVREKMFSAI LHNEIGWFDDANNTSSMLTSRLATDATLLRTIVVDRSSILLQNVGLVVTSFIIAFILNWRITAVVLATYPLIISGHISEKLFMQGYGGNLSKVYLKANML AAEAVSNIRTVAAFCAEDKVLDLYGHELVEPSKRSFTRGQIAGICYGISQFFIFSCYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAP DLLKGNQMAASVFELLDRKSQMGGDAGEELTKVEGKVELRDIHFIYPARPEVTIFKDFNLQVHSGKSVALVGQSGSGKSSVLALILRFYDPMGGKVLIDG KDIKKLNLRSLRRHIGLVQQEPALFATSIYDNILYGREGATEGEVIEAAKLANAHSFISALPQGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLD EATSALDAESENIVQQALDRLMRNRTTLMVAHRLSTIKNADQISVIQDGKIIEQGTHSSLVQKTDGAYFKLINLQQKQQKDGQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	0	1
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	1.0	0.9934
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	2.0	0.9271
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	2.0	0.9450
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	2.4	0.9352
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10000338 [exp]	2.4	0.8797
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	3.9	0.9153
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	5.7	0.8661
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10025957 [exp]	6.6	0.7762
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	7.0	0.8724
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	8.7	0.8291

Compare expression of checked genes

Lus10004571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.