Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17920 182 / 2e-55 RING/U-box superfamily protein (.1) AT5G46650 170 / 6e-51 RING/U-box superfamily protein (.1) AT1G32361 118 / 1e-30 ATL1F RING/U-box superfamily protein (.1) AT2G35420 114 / 5e-30 RING/U-box superfamily protein (.1) AT3G05200 115 / 2e-29 ATL6 RING/U-box superfamily protein (.1) AT4G40070 113 / 7e-29 RING/U-box superfamily protein (.1) AT1G72200 113 / 2e-28 RING/U-box superfamily protein (.1) AT1G22500 112 / 3e-28 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT2G35000 107 / 3e-26 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT5G27420 102 / 2e-24 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000487 [exp] 506 / 0 AT4G17920 196 / 4e-61 RING/U-box superfamily protein (.1) Lus10030972 [exp] 270 / 3e-89 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1) Lus10035368 [exp] 266 / 6e-88 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1) Lus10000333 [exp] 120 / 5e-31 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10004460 [exp] 120 / 5e-31 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 113 / 6e-29 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 111 / 3e-28 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029794 [exp] 105 / 4e-25 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10041134 [exp] 96 / 5e-22 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140900 [exp] 202 / 1e-63 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 195 / 9e-61 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 127 / 1e-33 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 121 / 2e-31 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 108 / 2e-26 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 86 / 9e-19 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 84 / 2e-18 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 84 / 5e-18 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 82 / 5e-18 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 80 / 5e-18 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10004572 pacid=23159376 polypeptide=Lus10004572 locus=Lus10004572.g ID=Lus10004572.BGIv1.0 annot-version=v1.0 ATGTCTTCCACCACCGACAGCACCACTATGCCGGCGGCAGATCATCAGACATCATTCCCAGCTCCACCGGTGACCGTAGTCCTAACAATCGTCATCATCA TCCTCTTCCTACTCGGCCTATTTTCAATCTATTTCTGTCGTTGCTTCCTGGAGAGCCTCTTGAACGGATGGCAGTTCGTCGGTCGAATTCCAAATCCCGG GAGAAATGCGGTAAACCCGAACTCCGCCAATCCGGTGGAAGACGGCCTTGATCCCGCCCTGATCGAGCGATTCCCGATGTTTCCATACTCATGCGTCAAG GAGTTCCGAAGGGATAAGCACGAATTGGAATGCGCCATCTGTCTCGTCGAATTCGAGGAAGATGACCTCCTCCGGTTGGTCATTGTGTGCTACCATGCAT TCCACCCCGATTGCATTGACCTTTGGCTTCGGTCTCACAAGACATGTCCTGTGTGCCGGCGAGACCTAGATCAGGTCTCGCGCAACAGTCTCGAGAAGAC CCCTCTCAACATCATCGAGCATATCAACTCGATGAGCGAGGACGAGAGGAGTAGTCCGCTCGAACACTCCATCACGATCAACAACAACAACACCGACAAC AAAAACGGTGTCATTGACAATGACAGAGATGGAGACAAAGACGAAACCACAAAAATGAGGAGCAGTAAAAAATTCACGAGATCCCACTCAACAGGGCACT CCATAGTGGTGTCCAGGTCGTCGATAGGGGATCACGGAGAGGACGGGGATGATCGGTACACATTGAGACTCATGCAAAATGTGAAGGTCAGGATGGTCGA TGACCCTGATGGACACTGTCCAACAGGGAGTTGTATCACATTCGGGGAATTTTCAGGTCCCCGAAAAACCATCAACGATGTTAACATGTTGCATATCGGT TGTGTTGGGTTCGGAGAGGTGACCACAGGGACTTCTACTTCTATAGTAGTGTAG
AA sequence Show only first row Show all	>Lus10004572 pacid=23159376 polypeptide=Lus10004572 locus=Lus10004572.g ID=Lus10004572.BGIv1.0 annot-version=v1.0 MSSTTDSTTMPAADHQTSFPAPPVTVVLTIVIIILFLLGLFSIYFCRCFLESLLNGWQFVGRIPNPGRNAVNPNSANPVEDGLDPALIERFPMFPYSCVK EFRRDKHELECAICLVEFEEDDLLRLVIVCYHAFHPDCIDLWLRSHKTCPVCRRDLDQVSRNSLEKTPLNIIEHINSMSEDERSSPLEHSITINNNNTDN KNGVIDNDRDGDKDETTKMRSSKKFTRSHSTGHSIVVSRSSIGDHGEDGDDRYTLRLMQNVKVRMVDDPDGHCPTGSCITFGEFSGPRKTINDVNMLHIG CVGFGEVTTGTSTSIVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	0	1
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	7.1	0.8178
AT1G68570			Major facilitator superfamily ...		Lus10017817 [exp]	8.7	0.6398
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	10.9	0.8153
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	12.8	0.6790
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	13.3	0.8153
					Lus10001790 [exp]	15.4	0.8153
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10034903 [exp]	16.6	0.8122
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	17.2	0.8153
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	18.8	0.8153
AT5G13660			unknown protein		Lus10005963 [exp]	20.3	0.8153

Compare expression of checked genes

Lus10004572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.