Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32360 337 / 8e-115 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT3G19360 149 / 1e-41 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 139 / 3e-39 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G68200 49 / 3e-06 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT5G06770 48 / 3e-06 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G12130 47 / 5e-06 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT1G66810 44 / 8e-05 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000486 [exp] 572 / 0 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10019431 [exp] 163 / 7e-48 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10043287 [exp] 162 / 5e-47 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10021043 [exp] 54 / 7e-08 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 51 / 1e-07 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10004183 [exp] 52 / 3e-07 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10034624 [exp] 49 / 2e-06 AT1G68200 251 / 5e-82 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10012016 [exp] 45 / 2e-06 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10035256 [exp] 49 / 3e-06 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093600 [exp] 412 / 1e-144 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 409 / 4e-143 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 167 / 3e-49 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 166 / 7e-49 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 97 / 5e-23 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.004G095100 [exp] 54 / 7e-08 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.017G119900 [exp] 52 / 3e-07 AT1G66810 221 / 3e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.016G046600 [exp] 47 / 5e-06 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.006G191900 [exp] 46 / 2e-05 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.010G118700 [exp] 45 / 2e-05 AT1G68200 243 / 1e-79 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10004573 pacid=23159388 polypeptide=Lus10004573 locus=Lus10004573.g ID=Lus10004573.BGIv1.0 annot-version=v1.0 ATGGAGGATAGCAGCAATGTCGTCCACGTGATTCCGAATCCGGTGTGGGCGACTGAGGAAGACTACATCAACAACTACGAGAGCGGTGAGCCGCCGAGCA AGAAGGCGAAAGGGAACAGCAAATCGATTGGGAAGATGTTCTTCAAGACGAAGCTGTGCTGTAAGTTTAGGGCAGGGACGTGTCCCTACGTGACCAACTG CAACTTCGCGCACAGCATGGAGGAGCTCCGCCGGCCGCCGCACAACTGGCAGGAGATCGTGGCGGCGTCGGAAGGGGAGGATGAGGTGGCGGCAAGGGAG GAGTTTCAGATCCCTGCTGTGGTGGGTGGGTTTGGTGCTGAGGCTCAGAGGTCTTATAAAGGGAGGCATTGTAAGAAGTTCTATACGGAGGAAGGGTGTC CTTATGGGGATAGTTGTACGTTCTTGCATGATGAGCAGTCCAAGAATAGGGAGAGTGTTGCTATTAGCTTGGGGCCTGGTGGCTATTGTGGTGGTGGTGG TGGTGGTGGTGGAGGGAATGGAGGAGGAGCAGGGAGTGGAGTTGTGGTGGTGGTAGGAGGGGGTAATAATGGAGGTGGTGGTAATGGTTCGAATCTGAAG CCGTCGAATTGGAAGACGAGGATCTGTAACAAGTGGGAGCTTACTGGTTATTGCCCTTTTGGTAGTAAATGCCATTTCGCTCATGGATCTGCAGAGCTAC ATCGTTATGGAGGCGGGCTTGTTGATTTGGAAGTCAAAGACTCACCCTCAGCTCCTTCCGACTCGAAGGCAGTAGGAGTCATGCCTTCAAAGTCACCCAT GGACGTGGTGGGTGCTGCGGTTACATCAGTCCCTCATTCTGATGTGTATCATCACCTTGGACTCCCTTCTCAGAGATCTGCAGCAACTCTAACTCAGAGA CCAGGGCAAAGGGCTCAAAAATGGAAAGGTCCTGATAAAATCAGTAGGATATACGGCGACTGGATCGACGACATGGAATGA
AA sequence Show only first row Show all	>Lus10004573 pacid=23159388 polypeptide=Lus10004573 locus=Lus10004573.g ID=Lus10004573.BGIv1.0 annot-version=v1.0 MEDSSNVVHVIPNPVWATEEDYINNYESGEPPSKKAKGNSKSIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSMEELRRPPHNWQEIVAASEGEDEVAARE EFQIPAVVGGFGAEAQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYCGGGGGGGGGNGGGAGSGVVVVVGGGNNGGGGNGSNLK PSNWKTRICNKWELTGYCPFGSKCHFAHGSAELHRYGGGLVDLEVKDSPSAPSDSKAVGVMPSKSPMDVVGAAVTSVPHSDVYHHLGLPSQRSAATLTQR PGQRAQKWKGPDKISRIYGDWIDDME

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	0	1
					Lus10034993 [exp]	1.4	0.8977
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	1.7	0.8524
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	2.0	0.8524
AT4G22320			unknown protein		Lus10032566 [exp]	2.0	0.8941
AT4G40045			unknown protein		Lus10034155 [exp]	3.3	0.8265
AT5G57970			DNA glycosylase superfamily pr...		Lus10026083 [exp]	6.9	0.8204
AT5G48385			FRIGIDA-like protein (.1)		Lus10004131 [exp]	10.3	0.7872
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	10.6	0.8307
AT4G21970			Protein of unknown function, D...		Lus10006781 [exp]	11.0	0.7806
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	11.0	0.8368

Compare expression of checked genes

Lus10004573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.