Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32640 359 / 9e-118 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 346 / 2e-113 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 334 / 2e-108 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 159 / 8e-43 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT1G01260 120 / 6e-29 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G46510 111 / 4e-26 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G16430 106 / 2e-24 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00870 105 / 2e-24 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 72 / 2e-13 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 71 / 4e-13 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004574 [exp] 724 / 0 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 592 / 0 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 503 / 1e-173 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 246 / 3e-79 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 246 / 6e-76 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035365 [exp] 155 / 6e-46 AT5G46760 129 / 7e-37 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 140 / 3e-36 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 117 / 6e-28 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 116 / 1e-27 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092200 [exp] 476 / 8e-163 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 471 / 4e-161 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 151 / 3e-40 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 145 / 3e-38 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 139 / 3e-36 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 137 / 2e-35 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 110 / 7e-26 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 110 / 1e-25 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 110 / 1e-25 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G221100 [exp] 106 / 2e-24 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004575 pacid=23159382 polypeptide=Lus10004575 locus=Lus10004575.g ID=Lus10004575.BGIv1.0 annot-version=v1.0 ATGACGCAGTCGTTCGTCAATGGTGTCGGGTTGCCGGGTCAGGCGTTCTTCAACGGTAGCCCTGTTTGGCTTGTTGGGTCGGATCGTATGGCCTCCGCTC CCTGCGATCGGGCTAAGCAAGGTCAGGTGTTTGGCCTCCAGACGATCGTCTGTATCCCGTCGGCTAACGGCGTCGTTGAGCTTGGCTCCACTGATTCCAT CTTCCACAGCTCGGATCTGATGAATAAGGTCAGAATTCTGTTCAATTTCAACTCTCTCGAATCCTTAGGCGGAGGCGGAGCTGGTTCATCCTGGCCGCCG CCGCCTACTCCGAATCACGACCAGGGAGAGAACGATCCCTCGTCACTCTGGATCAGCGATCCCGCCGTCGAAGACGGCCCCGTCACCGGGATCGCCAAAA CAGCTGCTCCACCGTCAACGAGCGGCTTGACGGAGAACAACAACATTTCTTCCGCTGCCGGAATCCACGGTAGCGGCCAGAACCAGAATAGCTTCTTCAC TCGTGAATTGAACTTCGGGAACTCCTCGCTGAAGCCAGAGGCAGGGGAGATTCTCAGCTTCGCCGATAGCAAGAGGAGCTCGTCAAGTCCAAACGGGAAC ATGTTCGCCGGGCAAAAACCGCCGGCGGCGGAGGAGAGCAACAAGAAGAAACGATCGAATCCGAATCCGAATCAAACGTCGAGAGGCAGTAACAAGGACG AAGGAATGCTTTCCTTTACGTCAGGAGTGATTCTGCCATCTTCAGGGAAAGTGAAATCAAGCGCCGGCGGAACAGCTGATTCAGACCCCTCAGACTTGGA AGCATCAATGGTTAGGGAAGTAGAGAGCAGGGTGGTGGAACCCGAGAAGAGGCCAAAGAAGCGAGGGAGGAAGCCGGCAAACGGTAGAGAGGAGCCACTG AACCATGTGGAAGCAGAGAGGCAGAGGAGGGAGAAGCTTAACCAAAAGTTCTACGCTTTGAGAGCAGTGGTTCCCAATGTGTCAAAGATGGACAAGGCTT CATTACTGGGTGACGCCATCTCGTACATCAAGGAGCTTCGATCGAAGCTCCAGTCGACGGAATCAGAGAAGGAGGAGCTGGAGAAGCAAGTCGAATCGAT GGTTAAAAAGCCGCCGCCTTCTTCTCCATCCGAATCGAAGATGTCCAACAATAACAATAACAGTATTAGCAGTAACAACCAGGCATCTTCAAAACCAGTG ATCGAGATGGACATAGACGTGAAGATCATAGGGTGGGATGCAATGATAAGGATCCAATGTAGCAAGAGGAACCATCCAGCAGCTAGACTAATGGCTGCTC TCAAAGAGCTGGACCTTGATGTTCACCATGCCAGTGTTTCAGTGGTGAATGATCTGATGATCCAGCAAGCTTCTGTGAAAATGGCTAGCCGGTTTTACAC CCAGGAGCAGCTCAGGTTAGCTCTGTCTACCAAAGTTGGTGACACTCGATAG
AA sequence Show only first row Show all	>Lus10004575 pacid=23159382 polypeptide=Lus10004575 locus=Lus10004575.g ID=Lus10004575.BGIv1.0 annot-version=v1.0 MTQSFVNGVGLPGQAFFNGSPVWLVGSDRMASAPCDRAKQGQVFGLQTIVCIPSANGVVELGSTDSIFHSSDLMNKVRILFNFNSLESLGGGGAGSSWPP PPTPNHDQGENDPSSLWISDPAVEDGPVTGIAKTAAPPSTSGLTENNNISSAAGIHGSGQNQNSFFTRELNFGNSSLKPEAGEILSFADSKRSSSSPNGN MFAGQKPPAAEESNKKKRSNPNPNQTSRGSNKDEGMLSFTSGVILPSSGKVKSSAGGTADSDPSDLEASMVREVESRVVEPEKRPKKRGRKPANGREEPL NHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAISYIKELRSKLQSTESEKEELEKQVESMVKKPPPSSPSESKMSNNNNNSISSNNQASSKPV IEMDIDVKIIGWDAMIRIQCSKRNHPAARLMAALKELDLDVHHASVSVVNDLMIQQASVKMASRFYTQEQLRLALSTKVGDTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10004575 [exp]	0	1
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10004574 [exp]	1.0	0.9485
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10007031 [exp]	10.1	0.8566
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	11.0	0.8674
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	14.1	0.7886
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	23.5	0.8072
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	24.0	0.7758
					Lus10010420 [exp]	27.6	0.7429
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	29.7	0.8448
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	31.9	0.7786
AT4G04614			unknown protein		Lus10014685 [exp]	32.7	0.7704

Compare expression of checked genes

Lus10004575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.