Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32550 248 / 6e-85 FdC1 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) AT2G27510 72 / 5e-16 ATFD3 ferredoxin 3 (.1) AT1G10960 67 / 3e-14 ATFD1 ferredoxin 1 (.1) AT1G60950 66 / 5e-14 FED A, ATFD2, FEDA FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT4G14890 55 / 9e-10 FdC2 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT5G10000 50 / 4e-08 ATFD4 ferredoxin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000483 [exp] 371 / 1e-133 AT1G32550 245 / 7e-84 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Lus10015462 [exp] 80 / 5e-19 AT1G60950 182 / 8e-60 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10043430 [exp] 76 / 2e-17 AT2G27510 179 / 3e-58 ferredoxin 3 (.1) Lus10001369 [exp] 75 / 4e-17 AT1G60950 186 / 1e-61 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10034144 [exp] 74 / 2e-16 AT2G27510 179 / 1e-58 ferredoxin 3 (.1) Lus10006116 [exp] 72 / 3e-16 AT4G14890 186 / 1e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10004870 [exp] 69 / 5e-15 AT2G27510 165 / 5e-53 ferredoxin 3 (.1) Lus10010557 [exp] 71 / 7e-15 AT4G14890 188 / 5e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10020616 [exp] 69 / 8e-15 AT2G27510 172 / 9e-56 ferredoxin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090400 [exp] 261 / 6e-90 AT1G32550 257 / 3e-88 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Potri.003G176400 [exp] 102 / 2e-27 AT1G32550 81 / 6e-19 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Potri.004G202500 [exp] 80 / 6e-19 AT2G27510 164 / 3e-52 ferredoxin 3 (.1) Potri.009G163800 [exp] 77 / 3e-18 AT2G27510 167 / 7e-54 ferredoxin 3 (.1) Potri.010G239100 [exp] 77 / 3e-18 AT2G27510 175 / 7e-57 ferredoxin 3 (.1) Potri.008G020100 [exp] 76 / 8e-18 AT2G27510 180 / 5e-59 ferredoxin 3 (.1) Potri.004G218400 [exp] 67 / 2e-14 AT1G60950 194 / 9e-65 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G015200 [exp] 66 / 5e-14 AT1G60950 176 / 2e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.008G153200 [exp] 62 / 1e-12 AT4G14890 193 / 2e-64 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.001G470700 [exp] 62 / 1e-12 AT1G60950 174 / 7e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10004576 pacid=23159372 polypeptide=Lus10004576 locus=Lus10004576.g ID=Lus10004576.BGIv1.0 annot-version=v1.0 ATGGACCTTATCGTTTCATGCAGCTACACCACTCACTCATCTCTCCACCTTAAATCCACACTTCCTTTCTCCCCTTCCACTTCCCGCCGGCCGAAATGGA TTCCGAGATCGGAGGTCCGAGCATCCGTCGGAGTGAACGGCCGATCCTCCACCCAGACGACGGTTCCCACTCATAAAGTCACCGTCCATGACCGCCAGCG GGGTGTAGTCCACGAGTTCGTTGTTCCAGAGGATCAGTATATACTTCACACCGGCGAATCTCAGGGTATTGAGCTTCCTTTTGCTTGCAGACATGGGTGT TGCACTAGTTGTGCAGTACGTGTAAAATCAGGACAACTCAGACAGCCGGAGGCTCTAGGGATATCTGCAGAACTCAAGGATAAGGCAGGACTTCTCTCGG GATATGCACTGCTTTGTGTTGGATTCCCATCTTCTGATCTGGAAGTTGAAACACAAGATGAGGATGAGGTATATTGGCTTCAGTTCGGTAGATATTTCGC ACGAGGGCCAATCGAAAGAGACGACTACGCGTTGGAGCTAGCCATGGGTGATGAATAA
AA sequence Show only first row Show all	>Lus10004576 pacid=23159372 polypeptide=Lus10004576 locus=Lus10004576.g ID=Lus10004576.BGIv1.0 annot-version=v1.0 MDLIVSCSYTTHSSLHLKSTLPFSPSTSRRPKWIPRSEVRASVGVNGRSSTQTTVPTHKVTVHDRQRGVVHEFVVPEDQYILHTGESQGIELPFACRHGC CTSCAVRVKSGQLRQPEALGISAELKDKAGLLSGYALLCVGFPSSDLEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	0	1
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	1.4	0.9636
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	1.7	0.9585
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	2.0	0.9620
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	2.0	0.9580
AT2G01870			unknown protein		Lus10030135 [exp]	2.4	0.9519
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	3.7	0.9402
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	5.5	0.9548
AT1G53250			unknown protein		Lus10028136 [exp]	5.7	0.9304
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	5.7	0.9383
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	6.0	0.9342

Compare expression of checked genes

Lus10004576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.