Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17900 264 / 1e-89 PLATZ transcription factor family protein (.1.2) AT1G32700 248 / 8e-84 PLATZ transcription factor family protein (.1.2) AT1G76590 199 / 6e-64 PLATZ transcription factor family protein (.1) AT1G21000 199 / 7e-64 PLATZ transcription factor family protein (.1.2) AT5G46710 193 / 7e-62 PLATZ transcription factor family protein (.1) AT1G43000 176 / 4e-55 PLATZ transcription factor family protein (.1) AT2G27930 153 / 1e-46 PLATZ transcription factor family protein (.1) AT2G12646 134 / 2e-38 PLATZ transcription factor family protein (.1) AT3G60670 130 / 3e-37 PLATZ transcription factor family protein (.1) AT1G31040 120 / 2e-33 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000482 [exp] 369 / 9e-131 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 302 / 3e-104 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 299 / 4e-103 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 251 / 1e-83 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 206 / 2e-66 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 204 / 3e-65 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 190 / 1e-60 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10035554 [exp] 188 / 5e-60 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 187 / 2e-59 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G141500 [exp] 306 / 3e-106 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 305 / 3e-106 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 268 / 3e-91 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 263 / 5e-89 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 208 / 2e-67 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 208 / 2e-67 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.016G097100 [exp] 192 / 6e-62 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 191 / 3e-61 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 180 / 8e-57 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 178 / 3e-56 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10004577 pacid=23159377 polypeptide=Lus10004577 locus=Lus10004577.g ID=Lus10004577.BGIv1.0 annot-version=v1.0 ATGATGGGTGCTGGTGGTCCGGATGAAGATGAAGGTAGGTGGCCGCCATGGTTGAAGCTGGTTTTAAGAGAGAGGTTCTTCGTTCAATGTAAAGAGCATG CCGATTCACACAAGAGTGAATGCAATATGTACTGCTTGGATTGTATGGACGGCTCTCTCTGCTCTCTCTGCCTGTCCGATCATAAGGAACACAGTTTCAT CCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTGAACGAGATACAGAAGGTTTTGGATATCTCTAATGTCCAGACCTACGTCATCAACAGTGCT CGGGTTGTGTTCTTGAACGAGAGGCCTCAGCCTAGGCCCGGAAAGGGTGTCACCAACACTTGCGAAGTCTGTGATCGTAGCCTCCTCGATTCCTTCCGAT TCTGCTCCCTTGGTTGCAAGGTTTTGGGGACATCCAAGAACTTCCAGAAGAGGAACAGGAAGCAGTTTGCAGTGACGGGATCGGATTCTGAGGAGTCGTC CTACAGCAGCCATGGCCATGGCGTTAGGAGGTGCAAGAACAAGAACAAGAACAAGTACAGCAATGGAAGCAGCCATTTCAGCAGCATTGTTGATAAAGGT GAGAGCTTTACGCCATCCACGCCACCTCCTACCTCGACGAGTTTCAGGACAGTGAAACGGAGGAAGGGAATCCCTCATAGAGCTCCCATGGGAGGGCTCA TCATGAAGTACTGA
AA sequence Show only first row Show all	>Lus10004577 pacid=23159377 polypeptide=Lus10004577 locus=Lus10004577.g ID=Lus10004577.BGIv1.0 annot-version=v1.0 MMGAGGPDEDEGRWPPWLKLVLRERFFVQCKEHADSHKSECNMYCLDCMDGSLCSLCLSDHKEHSFIQIRRSSYHDVIRVNEIQKVLDISNVQTYVINSA RVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKVLGTSKNFQKRNRKQFAVTGSDSEESSYSSHGHGVRRCKNKNKNKYSNGSSHFSSIVDKG ESFTPSTPPPTSTSFRTVKRRKGIPHRAPMGGLIMKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	0	1
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	1.4	0.9709
AT2G23755			unknown protein		Lus10019660 [exp]	2.6	0.9668
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	2.8	0.9759
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	4.2	0.9684
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	4.9	0.9689
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008021 [exp]	6.7	0.9605
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	7.7	0.9642
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	8.3	0.9691
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10019665 [exp]	8.9	0.9597
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	9.0	0.9645

Compare expression of checked genes

Lus10004577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.