Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17810 89 / 7e-22 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 84 / 3e-19 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT3G23130 71 / 1e-14 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 70 / 2e-14 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT5G06070 68 / 9e-14 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 58 / 3e-10 C2H2ZnF TAC1 telomerase activator1 (.1) AT3G53820 52 / 1e-08 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43540 49 / 1e-07 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 47 / 3e-06 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G80730 45 / 9e-06 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000481 [exp] 299 / 1e-103 AT4G17810 100 / 8e-26 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10030967 [exp] 89 / 3e-21 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040083 [exp] 86 / 2e-20 AT4G17810 123 / 8e-35 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004705 [exp] 85 / 6e-20 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1) Lus10024362 [exp] 81 / 5e-18 AT2G37740 105 / 4e-27 zinc-finger protein 10 (.1) Lus10010871 [exp] 81 / 7e-18 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10021490 [exp] 78 / 7e-17 AT2G37740 103 / 1e-25 zinc-finger protein 10 (.1) Lus10022206 [exp] 73 / 3e-15 AT3G23130 100 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021215 [exp] 73 / 6e-15 AT3G23130 102 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091200 [exp] 105 / 2e-27 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G142900 [exp] 100 / 8e-26 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089600 [exp] 81 / 4e-18 AT2G37740 102 / 2e-25 zinc-finger protein 10 (.1) Potri.016G101400 [exp] 81 / 6e-18 AT2G37740 108 / 3e-27 zinc-finger protein 10 (.1) Potri.010G199800 [exp] 81 / 6e-18 AT5G06070 100 / 4e-25 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G059000 [exp] 78 / 5e-17 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G163900 [exp] 70 / 2e-14 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074500 [exp] 69 / 4e-14 AT3G23130 73 / 7e-16 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 67 / 1e-13 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.005G221400 [exp] 63 / 6e-12 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004578 pacid=23159401 polypeptide=Lus10004578 locus=Lus10004578.g ID=Lus10004578.BGIv1.0 annot-version=v1.0 ATGACTACCGAGCTCGGGTTTTTCGCTCTCACTCAACTTCAAAAAATCGATCGCTCGCACCCTAAAAGTCAAGCTAAAAACAAACGAGGGGGCCACCAGC ACCAAGGTGCAGGTGAGGCAGCATCTGCTAGAGCTGTGGTCCCGCCAAGCGTGTGGATATGGAAACAAGATAACGGTCGATCAGGTCAGGAAGATATTCA TAATGGAGAGGAATCGTCATGGGAAGTTAAGGCGTTTGAGGAAGACATCACGAACCTTACTTGGCCACCACGCTCCTATGCTTGTAGCTTCTGTCGGCGT GAGTTTCGGTGCGCTCAGGCCCTAGGAGGCCACATGAACATCCATCGTCGCCTCCGGCCTAAGCTCAACTCGACGAATAACAACGTCCAAGTTAGAGGAG CCATTAACAATGCCATTGCCACCAAAACCACAACCACCACCACCAAAGTGACCAATGATGCATGCATCATCAATGCCACCTCACCTTCCACTTTCATGTT CATGCCACCGTTTCATCCCAGTGGTCAAGGAAGTTGCCATGTGGCAACGACGACGAAAGTGGCCCCGCTTAATATTTTAAGTTTTAGTAATGGAAAGCGA AAGGAAATGGAGATGGCGGTTGAGATGGAGATGGAGATAGATTTGGAGTTGAGGCTCTGGCATAGATCGCCATCGTCCTCAACGAATTCGTAG
AA sequence Show only first row Show all	>Lus10004578 pacid=23159401 polypeptide=Lus10004578 locus=Lus10004578.g ID=Lus10004578.BGIv1.0 annot-version=v1.0 MTTELGFFALTQLQKIDRSHPKSQAKNKRGGHQHQGAGEAASARAVVPPSVWIWKQDNGRSGQEDIHNGEESSWEVKAFEEDITNLTWPPRSYACSFCRR EFRCAQALGGHMNIHRRLRPKLNSTNNNVQVRGAINNAIATKTTTTTTKVTNDACIINATSPSTFMFMPPFHPSGQGSCHVATTTKVAPLNILSFSNGKR KEMEMAVEMEMEIDLELRLWHRSPSSSTNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	0	1
					Lus10039435 [exp]	1.0	0.9202
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10001225 [exp]	6.1	0.7132
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10014557 [exp]	8.7	0.8173
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	9.3	0.7917
					Lus10037542 [exp]	10.6	0.6350
AT1G55790			Domain of unknown function (DU...		Lus10032899 [exp]	10.8	0.7627
AT1G20590			Cyclin family protein (.1)		Lus10036416 [exp]	12.5	0.7119
					Lus10022805 [exp]	14.0	0.7852
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	15.7	0.7852
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	17.1	0.7852

Compare expression of checked genes

Lus10004578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.