Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78550 65 / 9e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 62 / 1e-11 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 59 / 1e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 59 / 1e-10 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 59 / 1e-10 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G16330 54 / 4e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25300 52 / 2e-08 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G08640 50 / 1e-07 ATFLS1, FLS flavonol synthase 1 (.1.2) AT1G60980 49 / 3e-07 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G49390 48 / 7e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011987 [exp] 134 / 2e-38 AT1G78550 284 / 1e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011986 [exp] 76 / 2e-16 AT1G17020 291 / 3e-96 senescence-related gene 1 (.1) Lus10007405 [exp] 69 / 4e-15 ND / Lus10030149 [exp] 68 / 1e-13 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10011985 [exp] 66 / 7e-13 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10042493 [exp] 63 / 2e-12 AT1G17020 242 / 4e-80 senescence-related gene 1 (.1) Lus10026173 [exp] 63 / 5e-12 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011980 [exp] 62 / 1e-11 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011981 [exp] 62 / 1e-11 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355200 [exp] 76 / 2e-16 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.001G382400 [exp] 72 / 2e-15 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.009G025900 [exp] 67 / 2e-13 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355100 [exp] 67 / 3e-13 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.010G023600 [exp] 56 / 9e-10 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G080600 [exp] 54 / 6e-09 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1) Potri.001G381700 [exp] 52 / 4e-08 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G022800 [exp] 52 / 5e-08 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.006G062500 [exp] 50 / 9e-08 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121700 [exp] 50 / 1e-07 AT5G20400 426 / 8e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004579 pacid=23149783 polypeptide=Lus10004579 locus=Lus10004579.g ID=Lus10004579.BGIv1.0 annot-version=v1.0 ATGGTAAGCGTTCAGGAGCTGGCCAAACGGCCACTCACCTCAATCCCACTGCAGTTTGTTCAACATCAGCTGGTCAACGGGATAGCTCCGAGTAGTTTGG ACTCCACGGCTGCGCCAACGGTTGACATGGGACTACTTTTGTCGGCGGATCTTAGGGTTGCGAATCTCGAACTCGAAAGGCTTCACTCTTGTTGCATGGA ATGGGGTATCTTCCAGTTAGATATACCAAAACCGTTGGTAGGGTTGATGGCAAATGCAATAAAGACGGAGAGGAAGAAGGTGGAGGAGATGATGGAGGAT GGGATGCAATCGGTGAGGATGACTTACTATCCGCCTTGCCCTAGGTCGGATCTGGTGATGGGGATAACTTCGCACTTTGATGCATCGTGCATCACGATTC TTAACCAGGTAATCGCCCGAATAACTGTGAAGTTATTCCGACAACACAAGTGTCGTTTGTGTCCGAAGGTCCCTCTCGCTATGCTTCTACTCGAATTCGT CAACACGGTTTAG
AA sequence Show only first row Show all	>Lus10004579 pacid=23149783 polypeptide=Lus10004579 locus=Lus10004579.g ID=Lus10004579.BGIv1.0 annot-version=v1.0 MVSVQELAKRPLTSIPLQFVQHQLVNGIAPSSLDSTAAPTVDMGLLLSADLRVANLELERLHSCCMEWGIFQLDIPKPLVGLMANAIKTERKKVEEMMED GMQSVRMTYYPPCPRSDLVMGITSHFDASCITILNQVIARITVKLFRQHKCRLCPKVPLAMLLLEFVNTV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78550			2-oxoglutarate (2OG) and Fe(II...		Lus10004579 [exp]	0	1

Compare expression of checked genes

Lus10004579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.