Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25300 159 / 2e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 158 / 6e-47 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 146 / 3e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 145 / 6e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 142 / 9e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 120 / 4e-32 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 97 / 1e-23 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 91 / 3e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20550 90 / 4e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G49390 89 / 7e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011981 [exp] 291 / 1e-98 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 248 / 1e-81 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 234 / 2e-76 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10004582 [exp] 201 / 3e-64 AT1G17020 231 / 2e-74 senescence-related gene 1 (.1) Lus10015252 [exp] 197 / 9e-62 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10026173 [exp] 169 / 1e-50 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 159 / 4e-47 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011985 [exp] 148 / 8e-43 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10030995 [exp] 140 / 9e-40 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355100 [exp] 175 / 4e-53 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G381700 [exp] 169 / 3e-51 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G382400 [exp] 164 / 6e-49 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.009G025900 [exp] 149 / 3e-43 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 129 / 1e-35 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G023600 [exp] 115 / 2e-30 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G022800 [exp] 114 / 5e-30 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023550 [exp] 105 / 1e-28 AT3G21420 210 / 6e-68 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 103 / 6e-26 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 100 / 5e-25 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004581 pacid=23149780 polypeptide=Lus10004581 locus=Lus10004581.g ID=Lus10004581.BGIv1.0 annot-version=v1.0 ATGCCTCCCAGTTCCTTGCGTTCAAGAGCTCGCCAAAGATCCTCTGCTCGCCGCCTCCGTCAACCACATGATACTATCATCAATCCCGCCGTCCAAGTTC CCGTTATTGATTTCCGCAAAATAGCGTGTCCGCCGTCGAGTGACGTCTACGACGACGAGCTTGGTAGGCTCTACGACGCTTGTAAACATTGGGGCTTCTT CCAGGTGGTTAATCATGGGGTGAGCAATTTATTAGAGGAGAGAATGAAGAAGGAGGTTCAAGAATGGTTCAACATTCCAATGGAAGAGAAGAAGAAGTTC TGGCAAAGATCTGGTGATTTGAAAGGTTTTGGGCAAGTCTTCGTGGTTTCTGAAGAACAAAAGTTAGATTGGGGAGATATGTTCTTCATCACTACACATC TCAGGACACCTTACCTCTTTCCCTTGTTGCCTCTTTCACTAAGGAGGGATACGTTGGAATATTCAGCAGCACTAAATAGTCTGGCTATGAAAATCCTGAA CCTGATGGCCAAAGCTCTAGGGATGGACCGAACTGACATGAACGTATTGTTTGGAGAAGAAGCGTGGCGAACAATTCCGAACGAACTATTATCAACGATG CCCGCAGCCGGAGCTGGTGATGGGTCTAAACTCTCACTCCGACACTGCCGGACTCACAATACTGTTACGAAGTGA
AA sequence Show only first row Show all	>Lus10004581 pacid=23149780 polypeptide=Lus10004581 locus=Lus10004581.g ID=Lus10004581.BGIv1.0 annot-version=v1.0 MPPSSLRSRARQRSSARRLRQPHDTIINPAVQVPVIDFRKIACPPSSDVYDDELGRLYDACKHWGFFQVVNHGVSNLLEERMKKEVQEWFNIPMEEKKKF WQRSGDLKGFGQVFVVSEEQKLDWGDMFFITTHLRTPYLFPLLPLSLRRDTLEYSAALNSLAMKILNLMAKALGMDRTDMNVLFGEEAWRTIPNELLSTM PAAGAGDGSKLSLRHCRTHNTVTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	0	1
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	1.4	0.9771
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	1.4	0.9719
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	2.2	0.9506
					Lus10003411 [exp]	3.3	0.9317
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	3.5	0.9475
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	3.9	0.9565
					Lus10016958 [exp]	4.6	0.9406
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	4.9	0.9369
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	6.0	0.9337
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	6.0	0.9170

Compare expression of checked genes

Lus10004581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.