Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 232 / 1e-74 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 220 / 5e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 217 / 5e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 215 / 4e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 213 / 2e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 140 / 3e-39 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 139 / 9e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 125 / 2e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 121 / 5e-32 ATJRG21 jasmonate-regulated gene 21 (.1) AT3G11180 121 / 9e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011979 [exp] 422 / 2e-149 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 389 / 3e-136 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011981 [exp] 342 / 7e-118 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10015252 [exp] 276 / 5e-92 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10026173 [exp] 234 / 5e-75 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 211 / 2e-66 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10004581 [exp] 201 / 3e-64 AT4G25300 159 / 4e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011985 [exp] 194 / 7e-60 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10032574 [exp] 191 / 1e-58 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355100 [exp] 258 / 1e-84 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G382400 [exp] 248 / 6e-81 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 234 / 1e-75 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G025900 [exp] 206 / 2e-64 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G022800 [exp] 188 / 9e-58 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.001G355200 [exp] 171 / 5e-51 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G201000 [exp] 159 / 2e-46 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 153 / 5e-44 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 149 / 9e-43 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 134 / 7e-37 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004582 pacid=23149755 polypeptide=Lus10004582 locus=Lus10004582.g ID=Lus10004582.BGIv1.0 annot-version=v1.0 ATGAGAGAGATCATGGAACAAGAGCTAACAAAGCTTGGAAGCTCCCTGCCAGTGCCATGCGTTCAGGAACTAGCCAAATATCCCCTCCTCACCTCCGTCC CTCCACCACGTTTCATCCGCCATGATCCACACCGTCCACACAACGATACCACTATCGAATCTACGGCTCAAGTTCCCTTAATCGGTTTGGAGAAACTACT ATCCTCGGATCAAGAGCTGGATAGGCTCCACGACGCTTGCAAACATTGGGGTTTCTTCCAGGTGATTAATCATGGGGTGAGCAATTCATTAGTGGAGAGA GTGAAGAAGGAGATTCAAGAATGGTTCAACATTCCAATGGAAGAGAAGAAGAAGTTCTGGCAGAGATGTGGAGATTTGGAAGGTTTTGGGCAAGCCTTTG TGGTTTCTGAAGAGCAAAAGCTTGATTGGGGAGATATGTTCTACCTTACTAGCCTCCCTATACATGAGAGGAGACCTTATCTCTTCCCTTTGTTGCCTCT CACACTCGGGTATTGTTTGAGTACTCAGCAACTGTTTGAATCGGGATACGCTGGAAGAATATTCAGTGGCACTGAAGAGTCTGGCCATGAAGATTCTGAA CCCGATGGCCAAGCTCTAGGGATGGACCAAAATGACTTGAATGTGTTGTTTGATGAAGAAGGGTGGCAGTTATTCCGGATGAACTATTATCCACCGTGTC CGCAGCCGGAGTTAGTGATGGGGCTCAACTCTCACTCCGACATCGTCGGACTCACCATCCTGCTGGAAGTTACCGCCAATACTCCAGGGTTACCGGTTAA AAAAAGATGGATATTGGGTTCCGGTCACGCCTCTCCCTAA
AA sequence Show only first row Show all	>Lus10004582 pacid=23149755 polypeptide=Lus10004582 locus=Lus10004582.g ID=Lus10004582.BGIv1.0 annot-version=v1.0 MREIMEQELTKLGSSLPVPCVQELAKYPLLTSVPPPRFIRHDPHRPHNDTTIESTAQVPLIGLEKLLSSDQELDRLHDACKHWGFFQVINHGVSNSLVER VKKEIQEWFNIPMEEKKKFWQRCGDLEGFGQAFVVSEEQKLDWGDMFYLTSLPIHERRPYLFPLLPLTLGYCLSTQQLFESGYAGRIFSGTEESGHEDSE PDGQALGMDQNDLNVLFDEEGWQLFRMNYYPPCPQPELVMGLNSHSDIVGLTILLEVTANTPGLPVKKRWILGSGHASP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10004582 [exp]	0	1
					Lus10011712 [exp]	1.4	0.7631
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Lus10018719 [exp]	8.7	0.7418
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	11.8	0.7752
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	14.1	0.7369
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10040944 [exp]	25.7	0.7048
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	26.9	0.7467
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10034379 [exp]	30.3	0.6736
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10036042 [exp]	30.6	0.7143
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	32.9	0.6975
AT4G11290			Peroxidase superfamily protein...		Lus10028688 [exp]	34.8	0.7337

Compare expression of checked genes

Lus10004582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.