Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02520 1469 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT2G47000 1432 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G62150 1406 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT4G01830 1390 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G18050 852 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 829 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G02530 756 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01820 723 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT1G10680 576 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 569 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009988 [exp] 1471 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 1408 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010012 [exp] 1224 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004520 [exp] 882 / 0 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038049 [exp] 797 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10012959 [exp] 771 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10009989 [exp] 764 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010068 [exp] 764 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038050 [exp] 724 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354900 [exp] 1637 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.014G113500 [exp] 1471 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1464 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 1454 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.014G113000 [exp] 1443 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 1433 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.002G187400 [exp] 1427 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1425 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G074000 [exp] 872 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G165000 [exp] 838 / 0 AT3G28860 857 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10004583 pacid=23149759 polypeptide=Lus10004583 locus=Lus10004583.g ID=Lus10004583.BGIv1.0 annot-version=v1.0 ATGTCCCGTCTCGCATCGCGGCCGACGATGATAAAGAGCGAGGAGGAGGAGACTCCGGCAGCGGCGTCGCCGCCTGAGATGAAGAAAGTGGAGAAGATTG CGTTCTACAAGATGTTCGCGTACGGAGACAAGCTGGACGTACTGCTGATGGCGGCGGGGTCATTAGGCGCGATCGGGAACGGGATTTCTCAGCCGTTGAT GACGATCATCTTCGGCGACCTGATCAACGCGTTCGGCCAATCCAGGGAATCGGAGCTCATCGCCAAAGTCACGACGGCTGCCTTGTTGATGGTTTACTTG GGGATCGCCACAGCCATAGCTGCATTTTTCCAGGTGTCCTGCTGGATGGTGACAGGAGAAAGGCAATCTGCCCGAATTAGGGCCCTGTACCTGAAGGCAA TCCTGAGGCAGGACATTGGCTATTTCGACACCGAAACCACGACCGGAGAGGTCATCGGAAGGATGTCTGGCGACACTGTTCTGGTCCAGGACGCCATGGG CGAAAAAGTAGGGAAGTTCACACAACAGATGTCACAGTTCATTACTGCCTTCATAGTTGCCTTCACAAAAGGATGGCTCCTCACTCTGGTTCTGCTTTTC ACCTTACCTATAATCGCCGGAATCGGAGCATGCGTCATGATTTTCGTCTCCCAAACATCGAGCCGCGGACAGCTGGCTTATGTCGACGCTGGAAACGTCG TTGAGCAGGCAATCGGAGCCATTAGGACGGTAGTGTCATTCACGGGAGAGAAGGTAGCAATTCAGAACTACAACAAGAAGCTGAAAGACGCTTACAAGGC TACACGGTTACAGAGCGTGGTTTCCGGAGCCGGATTTGGTGCGATGTTGTTCGTCATCTTCTCCTCTTACGGACTCGCCGTTTGGGTCGGAGCCAAACTC ATCATTCACAAAGGCTACAGCGGTGGGCAGATTATCAACGTCATCTTCTCAGTCCTCACCGGCGCAATAGTCCTTGGTCAGACATCTCCGTCGCTGAACG CGTTTGCAGCAGGGCAGGCAGCGGCATACAAGATGTTCGAGACGATCAAACGAGAGCCAAAAATCGACCCTTACGACGAGAGCGGGGAAGAATTGGAGAA TCTGAAGGGAGACATAGACCTGAAAGACGTGCATTTCAGGTACCCAGCAAGACCTGACGTACAAATCTTCCAAGGGTTCTCTCTACAAGTACCAAACGGG ACGACAGTGGCCTTAGTCGGACAGAGTGGGAGCGGAAAGTCGACAATCATCAGTCTGATCGAGCGATTCTACGATCCGAATTCTGGCCAGATACTCATTG ACGGGGTCGATCTGAAACAGCTGAAGCTGAGCTGGATAAGGAAACAGATCGGGCTGGTTAGCCAGGAGCCCGTTCTGTTCGCTACGACGATAAGGGAGAA TATTGCTTATGGAAAGGAGAATTCTACGGAGGAAGAGATCAGGACTGCGATGGAGCTTGCTAATGCGGCTAAGTTCATCAATACGATGCCGCAGGGGCTT GATACTATGGTAGGGGAGCACGGGACTCAAATGTCCGGTGGACAGAAGCAGAGGATTGCGATTGCTAGGGCCATAATGAAGAATCCGAAGATTCTTCTGC TTGATGAGGCGACGAGCGCGTTGGATTCGGAGTCGGAGCGAGTCGTTCAGGATGCGTTGGAGAGAGCGATGTCGAACCGGACGACTGTGGTGGTTGCGCA TCGGCTGACGACCATCAGGAATGCGGATGCTATAGCCGTCGTCCACAGAGGGAAGATCGTAGAGAAAGGAAGCCATGATGAACTGATTAAAGATCCTGAG GGCGGGTATTCTCAGCTAATCCGTCTTCAGGAAGGATCCAGAAAAGCTGAACAGCAACAGTACTCTCAAGCATCAGGTGAAATTAGCCAGCAGGAGAAAG AAATGATGATGACGACGACTTCAAGGTCAGGAAGTGGGAGGCAATCATCCATCCAGAGATCATTCAGCAGAGATTCAACGGACAGCAGGCCATCCTTCTC CATAACAGGCATTGCACTAGGCGTCCCTCCGCGGCCACTCGACATCGAAGAGATCCCTCCGAAGAGAGACGAGTTTCTGGAAGACGATGACGAAGAAGCA GCGAAGAAGAAACCGAAAAAGGTCTCTCTCAAAAGACTAGCAGCGTTGAACAAGCCCGAAATCGGAGTGCTTCTGGCCGGAAGCGTCGCTGCAGCAGTTC ACGGCGTGATTTTCCCCGTATTCGGCCTTCTGCTGGCAAATGCGATCAAGATGTTCTTCGAGCCTCCGCACCAGCTGAAGAAGGACTCAAACTTTTGGGC GTTGATGTACGTGACGATCGGGGCGGTGAACTTTGTGGCTTTACCGGCGCAGCACTGCTTCTTTGGGATTGCGGGAGGGAAGCTGATCGAGAGGATTCGT TCGTTGACCTTCGAAAGAATTGTTCATCAGGAAATCAGCTGGTTCGACGATCCTGCGAACTCGAGCGGTGCGGTTGGGTCGAGACTTTCGACTGATGCTT CGGCAATTCGGAGCCTTGTTGGGGATGCGTTGGGGTTACTGGCGCAGAATGTTTCGACAATTATAGCAGCATTGGTCATTTCCTTCGAGGCGAATTGGAT TCTGGCACTGATAGTTATCGTGGTTTCTCCGTTGATTGTCGGCCAGGCTATCGCCCAGGCCAAGTTCATCAAAGGTTTCAGCAAAGATGCAAAGGTAATG TACGAGGAAGCGAGTCAGGTGGCGAACGATGCAGTGGGAGGAATGCGGACCGTGGCATCCTTCTGTGCAGAGAACAAGGTGATCGAATTGTACCATCAGA AATGCAAGAATCCAATCGATAACGCTGTTCGAGCAGGGATGACTTGTGGGTTCGGGTTCGGATTCTCGTTCTTGGTAATCAACTGCATCAATGCCCTCCT TTTCTACTTGGGAGCTAAACTTGTACAGAAAGGGATTGCCAGTTTCCAGGATGTTTTCAAGGTTTTCTTTGCACTGACGATTGCAGCAGTTGGGATTTCT CAATCTAGCGGTGTAGCTCCTGACATCAGGAAGGCGATGGATTCTGCAGCTTCGATATTTGCTATCCTAGACAGAAAGTCCAGGATCGATTCCAGCGTGG ACGAAGGGATTACTCTAGGGAATTTGACAGGAGACATTGAGCTTCAGAATGTCAGCTTTTGCTACCCGATGCGACCGAATGTGCAAGTATTCAGGAATTT GAGTCTCACTATCCCATCTGGAAAGACTGTAGCTCTAGTTGGAGAAAGTGGAAGTGGGAAATCAACAGTAATAAGTCTGATAGAAAGATTCTACGACCCA GAATCAGGCACTGTGTTCTTAGACAAAGTAGACCTGAAGAAACTGAAGCTCACCTGGCTAAGACAGCATATGGGTCTAGTCGGGCAAGAACCGATCCTCT TCAACGACACGATCCGTGCGAACATTTCGTACGGAAAACACGACGGAAGCATCGCAACGGAGGAAGAGATCGTGGCGGCAGCCACGGCAGCCAACGCCAA CAGCTTCATAACCTCATTACCCCAAGGTTACGACACCAACGTCGGGGAGCGAGGCACGCAGCTTTCTGGCGGGCAGAAGCAGAGAATCGCCATCGCCAGG GCGGTGCTGAAGAACCCTAGGATACTTCTTCTAGACGAGGCGACCAGTGCATTGGATGCTGAGTCGGAGAGGATTGTTCAGGATGCGCTAGACAAGGTGA TGGTTAGTCGGACCACCGTTGTTGTTGCACACCGGCTCGCCACGATAAAGAATGCTGATCTGATAGCTGTGGTGAAGAATGGAGTGATTGTTGAGAAAGG TAAGCATGAGGAGTTGATGAAGATTAGCGGTGGGGCTTATGCTTCTTTGGTTACACTACATATGTCTGCAGAGTAG
AA sequence Show only first row Show all	>Lus10004583 pacid=23149759 polypeptide=Lus10004583 locus=Lus10004583.g ID=Lus10004583.BGIv1.0 annot-version=v1.0 MSRLASRPTMIKSEEEETPAAASPPEMKKVEKIAFYKMFAYGDKLDVLLMAAGSLGAIGNGISQPLMTIIFGDLINAFGQSRESELIAKVTTAALLMVYL GIATAIAAFFQVSCWMVTGERQSARIRALYLKAILRQDIGYFDTETTTGEVIGRMSGDTVLVQDAMGEKVGKFTQQMSQFITAFIVAFTKGWLLTLVLLF TLPIIAGIGACVMIFVSQTSSRGQLAYVDAGNVVEQAIGAIRTVVSFTGEKVAIQNYNKKLKDAYKATRLQSVVSGAGFGAMLFVIFSSYGLAVWVGAKL IIHKGYSGGQIINVIFSVLTGAIVLGQTSPSLNAFAAGQAAAYKMFETIKREPKIDPYDESGEELENLKGDIDLKDVHFRYPARPDVQIFQGFSLQVPNG TTVALVGQSGSGKSTIISLIERFYDPNSGQILIDGVDLKQLKLSWIRKQIGLVSQEPVLFATTIRENIAYGKENSTEEEIRTAMELANAAKFINTMPQGL DTMVGEHGTQMSGGQKQRIAIARAIMKNPKILLLDEATSALDSESERVVQDALERAMSNRTTVVVAHRLTTIRNADAIAVVHRGKIVEKGSHDELIKDPE GGYSQLIRLQEGSRKAEQQQYSQASGEISQQEKEMMMTTTSRSGSGRQSSIQRSFSRDSTDSRPSFSITGIALGVPPRPLDIEEIPPKRDEFLEDDDEEA AKKKPKKVSLKRLAALNKPEIGVLLAGSVAAAVHGVIFPVFGLLLANAIKMFFEPPHQLKKDSNFWALMYVTIGAVNFVALPAQHCFFGIAGGKLIERIR SLTFERIVHQEISWFDDPANSSGAVGSRLSTDASAIRSLVGDALGLLAQNVSTIIAALVISFEANWILALIVIVVSPLIVGQAIAQAKFIKGFSKDAKVM YEEASQVANDAVGGMRTVASFCAENKVIELYHQKCKNPIDNAVRAGMTCGFGFGFSFLVINCINALLFYLGAKLVQKGIASFQDVFKVFFALTIAAVGIS QSSGVAPDIRKAMDSAASIFAILDRKSRIDSSVDEGITLGNLTGDIELQNVSFCYPMRPNVQVFRNLSLTIPSGKTVALVGESGSGKSTVISLIERFYDP ESGTVFLDKVDLKKLKLTWLRQHMGLVGQEPILFNDTIRANISYGKHDGSIATEEEIVAAATAANANSFITSLPQGYDTNVGERGTQLSGGQKQRIAIAR AVLKNPRILLLDEATSALDAESERIVQDALDKVMVSRTTVVVAHRLATIKNADLIAVVKNGVIVEKGKHEELMKISGGAYASLVTLHMSAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	1.4	0.9014
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	2.2	0.8539
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	2.8	0.8724
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	3.7	0.7842
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	4.2	0.8640
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	6.6	0.8622
					Lus10038430 [exp]	6.9	0.8337
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10034372 [exp]	8.1	0.7633
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	9.0	0.8113
AT5G66660			Protein of unknown function (D...		Lus10018880 [exp]	12.0	0.7770

Compare expression of checked genes

Lus10004583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.